Conservation of cofitness between HER17_RS12035 and HER17_RS16045 in Pectobacterium carotovorum WPP14

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12035 MBL fold metallo-hydrolase 1.0 HER17_RS16045 exonuclease subunit SbcD 0.57 19
Serratia liquefaciens MT49 0.81 IAI46_08745 MBL fold metallo-hydrolase 0.71 IAI46_04770 exonuclease subunit SbcD low > 86
Dickeya dadantii 3937 0.78 DDA3937_RS12920 MBL fold metallo-hydrolase 0.71 DDA3937_RS05420 exonuclease subunit SbcD low > 74
Dickeya dianthicola ME23 0.78 DZA65_RS13455 MBL fold metallo-hydrolase 0.71 DZA65_RS05805 exonuclease subunit SbcD low > 75
Dickeya dianthicola 67-19 0.78 HGI48_RS12995 MBL fold metallo-hydrolase 0.71 HGI48_RS05480 exonuclease subunit SbcD low > 71
Enterobacter sp. TBS_079 0.77 MPMX20_01585 Hydroxyacylglutathione hydrolase GloC 0.57 MPMX20_00985 Nuclease SbcCD subunit D low > 85
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2009 Zn-dependent hydrolases, including glyoxylases 0.58 EX28DRAFT_2576 Exodeoxyribonuclease I subunit D (EC 3.1.11.1) low > 76
Escherichia coli ECRC62 0.77 BNILDI_20205 gloC hydroxyacylglutathione hydrolase GloC 0.58 BNILDI_22895 sbcD exonuclease subunit SbcD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_02740 Hydroxyacylglutathione hydrolase GloC 0.58 OHPLBJKB_03278 Nuclease SbcCD subunit D low > 73
Escherichia coli ECOR27 0.77 NOLOHH_21950 gloC hydroxyacylglutathione hydrolase GloC 0.58 NOLOHH_01480 sbcD exonuclease subunit SbcD low > 75
Escherichia coli BL21 0.76 ECD_00931 putative metal-binding enzyme 0.58 ECD_00346 exonuclease, dsDNA, ATP-dependent low > 61
Escherichia coli BW25113 0.76 b0927 ycbL predicted metal-binding enzyme (NCBI) 0.58 b0398 sbcD exonuclease, dsDNA, ATP-dependent (NCBI) low > 76
Escherichia coli ECOR38 0.76 HEPCGN_23135 gloC hydroxyacylglutathione hydrolase GloC 0.58 HEPCGN_07190 sbcD exonuclease subunit SbcD low > 87
Escherichia coli Nissle 1917 0.76 ECOLIN_RS04905 hydroxyacylglutathione hydrolase GloC 0.58 ECOLIN_RS02405 exonuclease subunit SbcD low > 55
Escherichia coli ECRC102 0.76 NIAGMN_03110 gloC hydroxyacylglutathione hydrolase GloC 0.58 NIAGMN_06605 sbcD exonuclease subunit SbcD
Escherichia coli ECRC100 0.76 OKFHMN_05390 gloC hydroxyacylglutathione hydrolase GloC 0.58 OKFHMN_08550 sbcD exonuclease subunit SbcD low > 80
Escherichia coli ECRC98 0.76 JDDGAC_09000 gloC hydroxyacylglutathione hydrolase GloC 0.58 JDDGAC_12205 sbcD exonuclease subunit SbcD low > 86
Escherichia fergusonii Becca 0.76 EFB2_03137 Hydroxyacylglutathione hydrolase GloC 0.58 EFB2_03659 Nuclease SbcCD subunit D low > 86
Escherichia coli ECRC99 0.76 KEDOAH_22345 gloC hydroxyacylglutathione hydrolase GloC 0.58 KEDOAH_19415 sbcD exonuclease subunit SbcD
Escherichia coli ECRC101 0.76 MCAODC_24780 gloC hydroxyacylglutathione hydrolase GloC 0.58 MCAODC_27775 sbcD exonuclease subunit SbcD low > 87
Klebsiella michiganensis M5al 0.76 BWI76_RS09865 MBL fold hydrolase 0.54 BWI76_RS06225 exonuclease sbcCD subunit D low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3684 Hypothetical metal-binding enzyme, YcbL homolog 0.56 GFF4294 Exonuclease SbcD low > 78
Rahnella sp. WP5 0.73 EX31_RS18150 MBL fold metallo-hydrolase 0.71 EX31_RS22035 exonuclease subunit SbcD low > 89
Pantoea sp. MT58 0.72 IAI47_12770 MBL fold metallo-hydrolase 0.60 IAI47_14860 exonuclease subunit SbcD low > 76
Erwinia tracheiphila SCR3 0.66 LU632_RS09895 MBL fold metallo-hydrolase 0.67 LU632_RS18930 sbcD exonuclease subunit SbcD low > 74
Shewanella amazonensis SB2B 0.62 Sama_2142 metallo-beta-lactamase family protein (RefSeq) 0.17 Sama_1267 exonuclease SbcD, putative (RefSeq) low > 62
Shewanella oneidensis MR-1 0.61 SO3054 metallo-beta-lactamase family protein (NCBI ptt file) 0.17 SO2844 exonuclease SbcD, putative (NCBI ptt file) low > 76
Azospirillum sp. SherDot2 0.61 MPMX19_04818 Hydroxyacylglutathione hydrolase GloC 0.21 MPMX19_04315 Nuclease SbcCD subunit D low > 112
Shewanella loihica PV-4 0.60 Shew_2269 beta-lactamase domain-containing protein (RefSeq) 0.17 Shew_2457 nuclease SbcCD, D subunit (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.57 MIT1002_03450 Beta-lactamase hydrolase-like protein 0.52 MIT1002_00897 Nuclease SbcCD subunit D low > 70
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS19750 MBL fold metallo-hydrolase 0.15 RR42_RS35935 exonuclease SbcD low > 128
Acinetobacter radioresistens SK82 0.49 MPMX26_00296 Hydroxyacylglutathione hydrolase GloC 0.21 MPMX26_02402 Nuclease SbcCD subunit D low > 36
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_14615 MBL fold hydrolase 0.33 CA264_11095 exonuclease sbcCD subunit D low > 74
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_1623 Hypothetical metal-binding enzyme, YcbL homolog 0.20 PfGW456L13_3307 Exonuclease SbcD low > 87
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2963 Hypothetical metal-binding enzyme, YcbL homolog 0.20 Pf1N1B4_4633 Exonuclease SbcD
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_15160 MBL fold metallo-hydrolase 0.20 AO353_23680 exonuclease SbcD low > 101
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS18785 MBL fold metallo-hydrolase 0.21 HMPREF1058_RS08350 exonuclease SbcCD subunit D C-terminal domain-containing protein low > 67
Pseudomonas stutzeri RCH2 0.32 Psest_3219 Zn-dependent hydrolases, including glyoxylases 0.22 Psest_3539 exonuclease SbcD low > 67
Pseudomonas putida KT2440 0.32 PP_0772 Metallo-beta-lactamase family protein 0.22 PP_2025 Exonuclease SbcD low > 96
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS15105 MBL fold metallo-hydrolase 0.21 ABI39_RS02545 exonuclease SbcCD subunit D low > 72
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS04625 MBL fold metallo-hydrolase 0.21 PFLU_RS17135 exonuclease subunit SbcD low > 109
Pseudomonas fluorescens SBW25 0.31 PFLU_RS04625 MBL fold metallo-hydrolase 0.21 PFLU_RS17135 exonuclease subunit SbcD low > 109
Pseudomonas simiae WCS417 0.31 PS417_04560 beta-lactamase 0.21 PS417_15115 exonuclease SbcD low > 88

Not shown: 41 genomes with orthologs for HER17_RS12035 only; 5 genomes with orthologs for HER17_RS16045 only