Conservation of cofitness between HER17_RS02810 and HER17_RS13060 in Pectobacterium carotovorum WPP14

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02810 peroxide stress protein YaaA 1.0 HER17_RS13060 DNA starvation/stationary phase protection protein Dps 0.86 7
Dickeya dadantii 3937 0.84 DDA3937_RS18400 peroxide stress protein YaaA 0.79 DDA3937_RS08815 DNA starvation/stationary phase protection protein Dps low > 74
Escherichia fergusonii Becca 0.82 EFB2_04037 Peroxide stress resistance protein YaaA 0.78 EFB2_03293 DNA protection during starvation protein low > 86
Enterobacter sp. TBS_079 0.82 MPMX20_00714 Peroxide stress resistance protein YaaA 0.77 MPMX20_01442 DNA protection during starvation protein low > 85
Escherichia coli ECOR38 0.82 HEPCGN_09095 yaaA peroxide stress protein YaaA 0.78 HEPCGN_01835 dps DNA starvation/stationary phase protection protein Dps low > 87
Escherichia coli Nissle 1917 0.82 ECOLIN_RS00035 peroxide stress protein YaaA 0.77 ECOLIN_RS04330 DNA starvation/stationary phase protection protein Dps — —
Dickeya dianthicola ME23 0.82 DZA65_RS19470 peroxide stress protein YaaA 0.79 DZA65_RS09205 DNA starvation/stationary phase protection protein Dps — —
Escherichia coli ECRC100 0.82 OKFHMN_11090 yaaA peroxide stress protein YaaA 0.78 OKFHMN_06205 dps DNA starvation/stationary phase protection protein Dps low > 80
Dickeya dianthicola 67-19 0.82 HGI48_RS18330 peroxide stress protein YaaA 0.79 HGI48_RS08890 DNA starvation/stationary phase protection protein Dps low > 71
Escherichia coli ECRC98 0.82 JDDGAC_14685 yaaA peroxide stress protein YaaA 0.78 JDDGAC_09840 dps DNA starvation/stationary phase protection protein Dps low > 86
Escherichia coli ECRC101 0.82 MCAODC_01605 yaaA peroxide stress protein YaaA 0.78 MCAODC_25420 dps DNA starvation/stationary phase protection protein Dps low > 87
Escherichia coli ECRC99 0.82 KEDOAH_17065 yaaA peroxide stress protein YaaA 0.78 KEDOAH_21705 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia coli BL21 0.82 ECD_00006 peroxide resistance protein, lowers intracellular iron 0.78 ECD_00779 Fe-binding and storage protein; stress-inducible DNA-binding protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03654 hypothetical protein 0.78 OHPLBJKB_02901 DNA protection during starvation protein low > 73
Escherichia coli ECRC102 0.82 NIAGMN_08940 yaaA peroxide stress protein YaaA 0.78 NIAGMN_04250 dps DNA starvation/stationary phase protection protein Dps — —
Enterobacter asburiae PDN3 0.81 EX28DRAFT_3618 Uncharacterized protein conserved in bacteria 0.77 EX28DRAFT_2174 DNA-binding ferritin-like protein (oxidative damage protectant) low > 76
Escherichia coli ECRC62 0.81 BNILDI_08185 yaaA peroxide stress protein YaaA 0.78 BNILDI_20835 dps DNA starvation/stationary phase protection protein Dps low > 75
Escherichia coli ECOR27 0.81 NOLOHH_03420 yaaA peroxide stress protein YaaA 0.78 NOLOHH_22555 dps DNA starvation/stationary phase protection protein Dps low > 75
Escherichia coli BW25113 0.81 b0006 yaaA hypothetical protein (NCBI) 0.78 b0812 dps DNA protection during starvation conditions (NCBI) 0.16 38
Serratia liquefaciens MT49 0.80 IAI46_03045 peroxide stress protein YaaA 0.77 IAI46_07545 DNA starvation/stationary phase protection protein Dps low > 86
Klebsiella michiganensis M5al 0.80 BWI76_RS04260 peroxide stress protein YaaA 0.76 BWI76_RS08980 DNA starvation/stationary phase protection protein low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF1081 UPF0246 protein YaaA 0.77 GFF707 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) 0.52 41
Pantoea sp. MT58 0.79 IAI47_16200 peroxide stress protein YaaA 0.77 IAI47_13195 DNA starvation/stationary phase protection protein Dps low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02625 yaaA peroxide stress protein YaaA 0.78 LU632_RS09460 dps DNA starvation/stationary phase protection protein Dps low > 74
Rahnella sp. WP5 0.76 EX31_RS03930 peroxide stress protein YaaA 0.84 EX31_RS18915 DNA starvation/stationary phase protection protein Dps low > 89
Pseudomonas putida KT2440 0.67 PP_1289 conserved protein of unknown function, DUF328 family 0.15 PP_1210 DNA-binding stress protein low > 96
Pseudomonas sp. RS175 0.67 PFR28_03554 Peroxide stress resistance protein YaaA 0.15 PFR28_03419 DNA protection during starvation protein 2 low > 88
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_17320 hypothetical protein 0.16 AO356_17990 ferritin low > 104
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_5389 UPF0246 protein YaaA 0.15 Pf6N2E2_5529 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_1064 Protein of unknown function DUF328 0.17 Psyr_1404 Ferritin and Dps low > 86
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_1064 Protein of unknown function DUF328 0.17 Psyr_1404 Ferritin and Dps low > 86
Pseudomonas simiae WCS417 0.65 PS417_04850 hypothetical protein 0.17 PS417_22480 ferritin low > 88
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS04920 peroxide stress protein YaaA 0.16 PFLU_RS24120 DNA starvation/stationary phase protection protein low > 109
Pseudomonas fluorescens SBW25 0.63 PFLU_RS04920 peroxide stress protein YaaA 0.16 PFLU_RS24120 DNA starvation/stationary phase protection protein low > 109
Shewanella amazonensis SB2B 0.63 Sama_0917 hypothetical protein (RefSeq) 0.16 Sama_2598 Dps family protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.60 MIT1002_03077 hypothetical protein 0.31 MIT1002_01444 DNA protection during starvation protein low > 70
Shewanella sp. ANA-3 0.58 Shewana3_3143 hypothetical protein (RefSeq) 0.18 Shewana3_0985 Ferritin, Dps family protein (RefSeq) low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF720 UPF0246 protein YaaA 0.20 GFF2804 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 90
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1593 UPF0246 protein YaaA 0.19 Ac3H11_786 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) — —
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_03496 hypothetical protein 0.16 CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase low > 67
Caulobacter crescentus NA1000 0.48 CCNA_03496 hypothetical protein 0.16 CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS06085 peroxide stress protein YaaA 0.16 A4249_RS05095 DNA starvation/stationary phase protection protein low > 48
Dinoroseobacter shibae DFL-12 0.43 Dshi_3333 protein of unknown function DUF328 (RefSeq) 0.34 Dshi_3912 Ferritin Dps family protein (RefSeq) low > 64
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS06535 peroxide stress protein YaaA 0.15 HMPREF1181_RS02165 DNA starvation/stationary phase protection protein low > 56

Not shown: 31 genomes with orthologs for HER17_RS02810 only; 11 genomes with orthologs for HER17_RS13060 only