Conservation of cofitness between HER17_RS01965 and HER17_RS06280 in Pectobacterium carotovorum WPP14

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS01965 peptidylprolyl isomerase 1.0 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.79 12
Dickeya dianthicola ME23 0.72 DZA65_RS20605 peptidylprolyl isomerase 0.88 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3723 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.84 GFF3846 Putative protease low > 78
Dickeya dianthicola 67-19 0.71 HGI48_RS19515 peptidylprolyl isomerase 0.88 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ low > 71
Dickeya dadantii 3937 0.71 DDA3937_RS19395 peptidylprolyl isomerase 0.90 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ low > 74
Escherichia coli ECRC98 0.71 JDDGAC_20915 slyD peptidylprolyl isomerase 0.83 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 86
Escherichia coli ECRC62 0.71 BNILDI_02435 slyD peptidylprolyl isomerase 0.83 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Escherichia coli ECRC101 0.71 MCAODC_07815 slyD peptidylprolyl isomerase 0.83 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Escherichia coli ECRC99 0.71 KEDOAH_10855 slyD peptidylprolyl isomerase 0.83 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli ECOR27 0.71 NOLOHH_09085 slyD peptidylprolyl isomerase 0.83 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_00354 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.83 OHPLBJKB_01623 putative protease YdcP low > 73
Escherichia coli ECOR38 0.71 HEPCGN_16115 slyD peptidylprolyl isomerase 0.83 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 87
Pantoea sp. MT58 0.71 IAI47_02040 peptidylprolyl isomerase 0.81 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ low > 76
Escherichia coli ECRC102 0.71 NIAGMN_15055 slyD peptidylprolyl isomerase 0.83 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ — —
Escherichia coli BW25113 0.71 b3349 slyD FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) 0.83 b2081 yegQ predicted peptidase (NCBI) low > 76
Escherichia fergusonii Becca 0.71 EFB2_00474 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.83 EFB2_01770 23S rRNA 5-hydroxycytidine synthase low > 86
Escherichia coli ECRC100 0.71 OKFHMN_17285 slyD peptidylprolyl isomerase 0.83 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.71 55
Escherichia coli Nissle 1917 0.71 ECOLIN_RS19180 peptidylprolyl isomerase 0.83 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ low > 55
Escherichia coli BL21 0.71 ECD_03200 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) 0.83 ECD_01986 putative peptidase low > 61
Enterobacter asburiae PDN3 0.70 EX28DRAFT_4181 FKBP-type peptidyl-prolyl cis-trans isomerases 2 0.83 EX28DRAFT_0478 Collagenase and related proteases low > 76
Enterobacter sp. TBS_079 0.70 MPMX20_04242 hypothetical protein 0.83 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase low > 85
Klebsiella michiganensis M5al 0.68 BWI76_RS25920 peptidylprolyl isomerase 0.85 BWI76_RS19280 U32 family peptidase low > 92
Erwinia tracheiphila SCR3 0.65 LU632_RS22725 slyD peptidylprolyl isomerase 0.79 LU632_RS08665 yegQ tRNA 5-hydroxyuridine modification protein YegQ low > 74
Alteromonas macleodii MIT1002 0.36 MIT1002_02725 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.71 MIT1002_02342 putative protease YhbU precursor low > 70
Shewanella amazonensis SB2B 0.36 Sama_0904 peptidyl-prolyl cis-trans isomerase SlyD (RefSeq) 0.73 Sama_1004 U32 family peptidase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0074 FKBP-type peptidyl-prolyl cis-trans isomerases 2 0.63 B158DRAFT_1722 Collagenase and related proteases low > 40
Shewanella loihica PV-4 0.35 Shew_1078 peptidylprolyl isomerase, FKBP-type (RefSeq) 0.72 Shew_2783 peptidase U32 (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.34 MPMX26_01005 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.63 MPMX26_02040 23S rRNA 5-hydroxycytidine synthase — —
Pseudomonas stutzeri RCH2 0.34 Psest_3212 FKBP-type peptidyl-prolyl cis-trans isomerases 2 0.78 Psest_4096 Collagenase and related proteases low > 67
Pseudomonas sp. RS175 0.33 PFR28_00197 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.72 PFR28_02843 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5262 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.72 Pf6N2E2_45 Putative protease low > 103
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS03790 peptidylprolyl isomerase 0.70 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ low > 109
Pseudomonas simiae WCS417 0.33 PS417_03740 peptidylprolyl isomerase 0.71 PS417_10300 protease low > 88
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_16690 peptidylprolyl isomerase 0.71 AO356_21300 protease low > 104
Pseudomonas putida KT2440 0.33 PP_0776 FKBP-type peptidyl-prolyl cis-trans isomerase 0.70 PP_2206 putative peptidase — —
Pseudomonas fluorescens SBW25 0.33 PFLU_RS03790 peptidylprolyl isomerase 0.70 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ low > 109
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_4988 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.73 PfGW456L13_2485 Putative protease low > 87
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_05055 peptidylprolyl isomerase 0.72 AO353_19800 protease low > 101
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_1052 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.72 Pf1N1B4_3925 Putative protease low > 87
Dechlorosoma suillum PS 0.28 Dsui_2872 FKBP-type peptidyl-prolyl cis-trans isomerase 0.58 Dsui_0433 collagenase-like protease low > 51
Pseudomonas sp. S08-1 0.28 OH686_06255 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.72 OH686_13055 Uncharacterized protease YegQ low > 80
Acidovorax sp. GW101-3H11 0.21 Ac3H11_1303 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.56 Ac3H11_3295 Probable protease (EC 3.4.24.3) low > 79

Not shown: 21 genomes with orthologs for HER17_RS01965 only; 11 genomes with orthologs for HER17_RS06280 only