Conservation of cofitness between HER17_RS12030 and HER17_RS04235 in Pectobacterium carotovorum WPP14

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12030 aspartate/tyrosine/aromatic aminotransferase 1.0 HER17_RS04235 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.90 12
Serratia liquefaciens MT49 0.88 IAI46_08750 aspartate/tyrosine/aromatic aminotransferase 0.78 IAI46_03685 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 86
Escherichia coli ECRC62 0.87 BNILDI_20195 aspC aspartate transaminase 0.75 BNILDI_10735 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 75
Escherichia coli BW25113 0.87 b0928 aspC aspartate aminotransferase, PLP-dependent (NCBI) 0.75 b2764 cysJ sulfite reductase, alpha subunit, flavoprotein (NCBI) 0.56 53
Escherichia coli ECOR27 0.87 NOLOHH_21940 aspC aspartate transaminase 0.75 NOLOHH_12185 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.77 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.87 OHPLBJKB_02738 Aspartate aminotransferase 0.75 OHPLBJKB_00969 Sulfite reductase [NADPH] flavoprotein alpha-component low > 73
Escherichia coli ECOR38 0.87 HEPCGN_23140 aspC aspartate transaminase 0.75 HEPCGN_19095 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 87
Escherichia coli BL21 0.87 ECD_00932 aspartate aminotransferase, PLP-dependent 0.75 ECD_02609 sulfite reductase, alpha subunit, flavoprotein — —
Escherichia coli Nissle 1917 0.86 ECOLIN_RS04910 aspartate transaminase 0.75 ECOLIN_RS15410 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Rahnella sp. WP5 0.86 EX31_RS18145 aspartate/tyrosine/aromatic aminotransferase 0.77 EX31_RS07905 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.55 16
Escherichia fergusonii Becca 0.86 EFB2_03136 Aspartate aminotransferase 0.75 EFB2_01153 Sulfite reductase [NADPH] flavoprotein alpha-component 0.32 30
Escherichia coli ECRC98 0.86 JDDGAC_08995 aspC aspartate transaminase 0.74 JDDGAC_24035 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 86
Escherichia coli ECRC101 0.86 MCAODC_24775 aspC aspartate transaminase 0.74 MCAODC_10895 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.76 14
Escherichia coli ECRC99 0.86 KEDOAH_22350 aspC aspartate transaminase 0.74 KEDOAH_07755 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Escherichia coli ECRC100 0.86 OKFHMN_05385 aspC aspartate transaminase 0.74 OKFHMN_20370 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 80
Escherichia coli ECRC102 0.86 NIAGMN_03105 aspC aspartate transaminase 0.74 NIAGMN_18140 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Klebsiella michiganensis M5al 0.86 BWI76_RS09870 aromatic amino acid aminotransferase 0.74 BWI76_RS22765 sulfite reductase subunit alpha 0.32 14
Dickeya dianthicola 67-19 0.86 HGI48_RS12990 aspartate/tyrosine/aromatic aminotransferase 0.79 HGI48_RS17015 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.83 5
Enterobacter sp. TBS_079 0.86 MPMX20_01586 Aspartate aminotransferase 0.75 MPMX20_03643 Sulfite reductase [NADPH] flavoprotein alpha-component 0.55 3
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF3685 Aspartate aminotransferase (EC 2.6.1.1) 0.74 GFF4820 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) low > 78
Dickeya dadantii 3937 0.85 DDA3937_RS12915 aspartate/tyrosine/aromatic aminotransferase 0.80 DDA3937_RS16945 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.67 50
Enterobacter asburiae PDN3 0.85 EX28DRAFT_2008 Aspartate/tyrosine/aromatic aminotransferase 0.77 EX28DRAFT_2853 sulfite reductase [NADPH] flavoprotein, alpha-component low > 76
Dickeya dianthicola ME23 0.85 DZA65_RS13450 aspartate/tyrosine/aromatic aminotransferase 0.79 DZA65_RS18090 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.56 69
Pantoea sp. MT58 0.84 IAI47_12765 aspartate/tyrosine/aromatic aminotransferase 0.78 IAI47_04150 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.34 29
Erwinia tracheiphila SCR3 0.83 LU632_RS09905 aspartate/tyrosine/aromatic aminotransferase 0.73 LU632_RS06400 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.93 3
Shewanella loihica PV-4 0.66 Shew_1999 aromatic amino acid aminotransferase (RefSeq) 0.49 Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq) low > 60
Shewanella sp. ANA-3 0.64 Shewana3_2121 aromatic amino acid aminotransferase (RefSeq) 0.48 Shewana3_0855 sulfite reductase (NADPH) alpha subunit (RefSeq) 0.62 13
Shewanella amazonensis SB2B 0.64 Sama_1805 aromatic amino acid aminotransferase (RefSeq) 0.49 Sama_2839 sulfite reductase subunit alpha (RefSeq) low > 62
Shewanella oneidensis MR-1 0.64 SO2350 aspC-1 aspartate aminotransferase (NCBI ptt file) 0.49 SO3738 cysJ sulfite reductase (NADPH) flavoprotein alpha-component (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_06530 aromatic amino acid aminotransferase 0.53 CSW01_02010 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 62
Castellaniella sp019104865 MT123 0.49 ABCV34_RS05115 amino acid aminotransferase 0.39 ABCV34_RS00220 assimilatory sulfite reductase (NADPH) flavoprotein subunit — —
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.130.1 hypothetical protein 0.35 Xcc-8004.1258.1 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) low > 74
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_13195 Aminotransferase 0.38 OKGIIK_05960 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 52
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS10685 aspartate/tyrosine/aromatic aminotransferase 0.37 LRK54_RS00930 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 59
Rhodanobacter denitrificans MT42 0.45 LRK55_RS10325 amino acid aminotransferase 0.37 LRK55_RS00705 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 63
Alteromonas macleodii MIT1002 0.45 MIT1002_02269 Aspartate aminotransferase 0.47 MIT1002_03380 Sulfite reductase [NADPH] flavoprotein alpha-component — —

Not shown: 16 genomes with orthologs for HER17_RS12030 only; 7 genomes with orthologs for HER17_RS04235 only