Conservation of cofitness between GFF124 and GFF76 in Sphingobium sp. HT1-2

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF124 Transcriptional regulator, LysR family 1.0 GFF76 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.63 20
Azospirillum sp. SherDot2 0.42 MPMX19_01133 HTH-type transcriptional regulator PgrR 0.39 MPMX19_01584 Deoxyribodipyrimidine photo-lyase low > 112
Rhizobium sp. OAE497 0.42 ABIE40_RS11620 LysR family transcriptional regulator 0.41 ABIE40_RS08320 deoxyribodipyrimidine photo-lyase low > 107
Azospirillum brasilense Sp245 0.41 AZOBR_RS19720 LysR family transcriptional regulator 0.40 AZOBR_RS09290 deoxyribodipyrimidine photo-lyase low > 97
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_1207 Transcriptional regulator, LysR family 0.25 Pf1N1B4_2927 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) low > 87
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_5137 Transcriptional regulator, LysR family 0.24 PfGW456L13_1589 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) low > 87
Pseudomonas sp. SVBP6 0.38 COO64_RS02785 LysR family transcriptional regulator 0.23 COO64_RS03260 phrB deoxyribodipyrimidine photo-lyase low > 93
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_05905 LysR family transcriptional regulator 0.26 AO353_14820 deoxyribodipyrimidine photolyase low > 101
Klebsiella pneumoniae MKP103 0.38 KDGMDA_13665 DNA-binding transcriptional regulator YafC 0.24 KDGMDA_16655 deoxyribodipyrimidine photo-lyase low > 95
Klebsiella michiganensis M5al 0.38 BWI76_RS05415 LysR family transcriptional regulator 0.25 BWI76_RS08335 deoxyribodipyrimidine photo-lyase low > 92
Escherichia coli BW25113 0.37 b0208 yafC predicted DNA-binding transcriptional regulator (NCBI) 0.26 b0708 phr deoxyribodipyrimidine photolyase, FAD-binding (NCBI) low > 76
Escherichia coli ECRC62 0.37 BNILDI_09325 yafC DNA-binding transcriptional regulator YafC 0.26 BNILDI_21400 phrB deoxyribodipyrimidine photo-lyase low > 75
Escherichia coli ECOR27 0.36 NOLOHH_02345 yafC DNA-binding transcriptional regulator YafC 0.26 NOLOHH_23405 phrB deoxyribodipyrimidine photo-lyase 0.32 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_03453 HTH-type transcriptional regulator DmlR 0.26 OHPLBJKB_03009 Deoxyribodipyrimidine photo-lyase low > 74
Escherichia fergusonii Becca 0.36 EFB2_03835 HTH-type transcriptional regulator DmlR 0.26 EFB2_03395 Deoxyribodipyrimidine photo-lyase low > 86
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS25440 LysR family transcriptional regulator 0.26 PFLU_RS03715 deoxyribodipyrimidine photo-lyase low > 109
Escherichia coli Nissle 1917 0.36 ECOLIN_RS01140 DNA-binding transcriptional regulator YafC 0.26 ECOLIN_RS03790 deoxyribodipyrimidine photo-lyase low > 55
Pseudomonas fluorescens SBW25 0.36 PFLU_RS25440 LysR family transcriptional regulator 0.26 PFLU_RS03715 deoxyribodipyrimidine photo-lyase low > 109
Escherichia coli BL21 0.36 ECD_00201 LysR family putative transcriptional regulator 0.26 ECD_00668 deoxyribodipyrimidine photolyase, FAD-binding low > 61
Escherichia coli ECRC101 0.36 MCAODC_00515 yafC DNA-binding transcriptional regulator YafC 0.26 MCAODC_26245 phrB deoxyribodipyrimidine photo-lyase low > 87
Escherichia coli ECRC102 0.36 NIAGMN_07850 yafC DNA-binding transcriptional regulator YafC 0.26 NIAGMN_05080 phrB deoxyribodipyrimidine photo-lyase low > 80
Escherichia coli ECRC98 0.36 JDDGAC_13595 yafC DNA-binding transcriptional regulator YafC 0.26 JDDGAC_10680 phrB deoxyribodipyrimidine photo-lyase low > 87
Pseudomonas lactucae CFBP13502 0.36 GEMAOFIL_04875 HTH-type transcriptional regulator DmlR 0.25 GEMAOFIL_00939 Deoxyribodipyrimidine photo-lyase low > 96
Escherichia coli ECRC100 0.36 OKFHMN_10000 yafC DNA-binding transcriptional regulator YafC 0.26 OKFHMN_07025 phrB deoxyribodipyrimidine photo-lyase low > 79
Escherichia coli ECRC99 0.36 KEDOAH_18155 yafC DNA-binding transcriptional regulator YafC 0.26 KEDOAH_20940 phrB deoxyribodipyrimidine photo-lyase — —
Escherichia coli ECOR38 0.36 HEPCGN_07940 yafC DNA-binding transcriptional regulator YafC 0.26 HEPCGN_01190 phrB deoxyribodipyrimidine photo-lyase low > 88
Dickeya dadantii 3937 0.36 DDA3937_RS03655 LysR family transcriptional regulator 0.26 DDA3937_RS06405 deoxyribodipyrimidine photo-lyase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF4039 LysR family transcriptional regulator YafC 0.24 GFF4612 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) low > 78
Pseudomonas segetis P6 0.35 MPMX49_02847 HTH-type transcriptional regulator DmlR 0.24 MPMX49_01348 Deoxyribodipyrimidine photo-lyase low > 75
Pantoea agglomerans CFBP13505 P0401 0.35 PagCFBP13505_RS09800 LysR family transcriptional regulator 0.25 PagCFBP13505_RS03490 deoxyribodipyrimidine photo-lyase low > 74
Lysobacter sp. OAE881 0.35 ABIE51_RS06090 LysR family transcriptional regulator 0.34 ABIE51_RS09260 deoxyribodipyrimidine photo-lyase low > 62
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2687 Transcriptional regulator 0.25 EX28DRAFT_2278 Deoxyribodipyrimidine photolyase low > 76
Enterobacter sp. TBS_079 0.35 MPMX20_00892 HTH-type transcriptional regulator DmlR 0.26 MPMX20_01343 Deoxyribodipyrimidine photo-lyase low > 85
Serratia liquefaciens MT49 0.35 IAI46_04115 LysR family transcriptional regulator 0.28 IAI46_06200 deoxyribodipyrimidine photo-lyase low > 87
Paraburkholderia graminis OAS925 0.34 ABIE53_001728 DNA-binding transcriptional LysR family regulator 0.23 ABIE53_004843 deoxyribodipyrimidine photo-lyase low > 113
Rhodospirillum rubrum S1H 0.34 Rru_A1041 Transcriptional Regulator, LysR family (NCBI) 0.40 Rru_A2903 Deoxyribodipyrimidine photolyase (NCBI) low > 58
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS07550 LysR family transcriptional regulator 0.24 BPHYT_RS33665 deoxyribodipyrimidine photo-lyase — —
Marinobacter adhaerens HP15 0.33 HP15_2718 transcriptional regulator, LysR family protein 0.24 HP15_715 deoxyribodipyrimidine photolyase low > 73
Pseudomonas sp. S08-1 0.33 OH686_12450 Transcriptional regulator, LysR family 0.24 OH686_07850 Deoxyribodipyrimidine photolyase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.4646.1 Transcriptional regulator, LysR family 0.36 Xcc-8004.3484.1 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) low > 74
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS21145 LysR family transcriptional regulator 0.36 ABZR86_RS01855 deoxyribodipyrimidine photo-lyase low > 74

Not shown: 1 genomes with orthologs for GFF124 only; 64 genomes with orthologs for GFF76 only