Conservation of cofitness between GFF1749 and GFF5080 in Variovorax sp. SCN45

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) 1.0 GFF5080 DNA recombination-dependent growth factor RdgC 0.59 9
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS11250 cystathionine beta-lyase 0.32 ABZR87_RS18475 recombination-associated protein RdgC low > 80
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS30610 cystathionine beta-lyase 0.32 RR42_RS17820 recombinase RdgC low > 128
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_0607 cystathionine beta-lyase 0.22 Psyr_1588 Putative exonuclease, RdgC low > 86
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_0607 cystathionine beta-lyase 0.22 Psyr_1588 Putative exonuclease, RdgC low > 86
Shewanella amazonensis SB2B 0.41 Sama_2008 cystathionine beta-lyase (RefSeq) 0.20 Sama_1072 rdgC recombination associated protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.40 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.21 Shewana3_2881 rdgC recombination associated protein (RefSeq) low > 73
Shewanella loihica PV-4 0.40 Shew_1789 cystathionine beta-lyase (RefSeq) 0.22 Shew_2751 rdgC recombination associated protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.40 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.21 SO1556 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_24330 cystathionine beta-lyase 0.23 AO353_02515 recombination-associated protein RdgC low > 101
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_08400 cystathionine beta-lyase 0.24 CSW01_03755 recombination-associated protein RdgC low > 62
Escherichia coli BW25113 0.36 b3008 metC cystathionine beta-lyase (NCBI) 0.24 b0393 rdgC recombination associated protein (NCBI) low > 76
Escherichia coli ECRC62 0.36 BNILDI_00780 metC cystathionine beta-lyase 0.24 BNILDI_22915 rdgC recombination-associated protein RdgC low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00693 Cystathionine beta-lyase MetC 0.24 OHPLBJKB_03282 Recombination-associated protein RdgC low > 73
Escherichia coli ECOR27 0.36 NOLOHH_10735 metC cystathionine beta-lyase 0.24 NOLOHH_01500 rdgC recombination-associated protein RdgC low > 75
Serratia liquefaciens MT49 0.36 IAI46_21725 cystathionine beta-lyase 0.24 IAI46_04710 recombination-associated protein RdgC low > 86
Escherichia fergusonii Becca 0.36 EFB2_00802 Cystathionine beta-lyase MetC 0.24 EFB2_03663 Recombination-associated protein RdgC low > 86
Escherichia coli Nissle 1917 0.36 ECOLIN_RS17315 cystathionine beta-lyase 0.24 ECOLIN_RS02385 recombination-associated protein RdgC low > 55
Escherichia coli ECOR38 0.36 HEPCGN_17825 metC cystathionine beta-lyase 0.24 HEPCGN_07210 rdgC recombination-associated protein RdgC low > 87
Escherichia coli BL21 0.36 ECD_02881 cystathionine beta-lyase, PLP-dependent 0.24 ECD_00342 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function low > 61
Escherichia coli ECRC101 0.36 MCAODC_09475 metC cystathionine beta-lyase 0.24 MCAODC_27795 rdgC recombination-associated protein RdgC low > 87
Escherichia coli ECRC100 0.36 OKFHMN_18960 metC cystathionine beta-lyase 0.24 OKFHMN_08570 rdgC recombination-associated protein RdgC low > 80
Klebsiella michiganensis M5al 0.36 BWI76_RS24285 cystathionine beta-lyase 0.24 BWI76_RS06205 recombination-associated protein RdgC low > 92
Escherichia coli ECRC102 0.36 NIAGMN_16725 metC cystathionine beta-lyase 0.24 NIAGMN_06625 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC98 0.36 JDDGAC_22595 metC cystathionine beta-lyase 0.24 JDDGAC_12225 rdgC recombination-associated protein RdgC low > 86
Escherichia coli ECRC99 0.36 KEDOAH_09185 metC cystathionine beta-lyase 0.24 KEDOAH_19395 rdgC recombination-associated protein RdgC — —
Enterobacter asburiae PDN3 0.35 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.24 EX28DRAFT_2579 DNA recombination-dependent growth factor C low > 76
Enterobacter sp. TBS_079 0.35 MPMX20_03852 Cystathionine beta-lyase MetC 0.24 MPMX20_00982 Recombination-associated protein RdgC low > 85
Pantoea sp. MT58 0.35 IAI47_03215 cystathionine beta-lyase 0.25 IAI47_14910 recombination-associated protein RdgC low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) 0.25 GFF4290 DNA recombination-dependent growth factor C low > 78
Rahnella sp. WP5 0.34 EX31_RS08025 cystathionine beta-lyase 0.25 EX31_RS21990 recombination-associated protein RdgC low > 89
Erwinia tracheiphila SCR3 0.34 LU632_RS20545 metC cystathionine beta-lyase 0.25 LU632_RS18955 rdgC recombination-associated protein RdgC low > 74
Pectobacterium carotovorum WPP14 0.34 HER17_RS19690 cystathionine beta-lyase 0.24 HER17_RS16060 recombination-associated protein RdgC low > 75
Dickeya dadantii 3937 0.34 DDA3937_RS01815 cystathionine beta-lyase 0.25 DDA3937_RS05405 recombination-associated protein RdgC low > 74
Dickeya dianthicola ME23 0.33 DZA65_RS01785 cystathionine beta-lyase 0.25 DZA65_RS05790 recombination-associated protein RdgC low > 75
Dickeya dianthicola 67-19 0.33 HGI48_RS01710 cystathionine beta-lyase 0.25 HGI48_RS05465 recombination-associated protein RdgC — —

Not shown: 10 genomes with orthologs for GFF1749 only; 33 genomes with orthologs for GFF5080 only