Conservation of cofitness between PS417_26370 and PS417_25645 in Pseudomonas simiae WCS417

23 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_26370 RNA helicase 1.0 PS417_25645 peptidase M23 0.44 7
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.94 PFLU_RS27300 peptidoglycan DD-metalloendopeptidase family protein low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA 0.94 PFLU_RS27300 peptidoglycan DD-metalloendopeptidase family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_13770 ATP-dependent RNA helicase 0.87 AO356_14505 peptidase M23 low > 104
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA 0.81 Pf6N2E2_4839 Cell wall endopeptidase, family M23/M37 — —
Pseudomonas sp. RS175 0.94 PFR28_04172 ATP-dependent RNA helicase DbpA 0.86 PFR28_04030 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA 0.84 Pf1N1B4_2563 Cell wall endopeptidase, family M23/M37 — —
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA 0.82 PfGW456L13_1236 Cell wall endopeptidase, family M23/M37 low > 87
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_07850 ATP-dependent RNA helicase 0.87 AO353_07140 peptidase M23 low > 101
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA 0.77 Psyr_4566 Peptidase M23B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA 0.77 Psyr_4566 Peptidase M23B — —
Pseudomonas putida KT2440 0.85 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA 0.76 PP_0435 Peptidase, M23/M37 family low > 96
Pseudomonas stutzeri RCH2 0.84 Psest_0344 Superfamily II DNA and RNA helicases 0.62 Psest_3636 Membrane proteins related to metalloendopeptidases — —
Pseudomonas sp. S08-1 0.74 OH686_14770 ATP-dependent 23S rRNA helicase DbpA 0.66 OH686_15210 Peptidase, M23/M37 family — —
Marinobacter adhaerens HP15 0.59 HP15_1329 DEAD/DEAH box helicase domain protein 0.39 HP15_357 peptidase M23B — —
Shewanella amazonensis SB2B 0.53 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) 0.31 Sama_0849 M24/M37 family peptidase (RefSeq) low > 62
Shewanella sp. ANA-3 0.53 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) 0.31 Shewana3_3059 peptidase M23B (RefSeq) low > 73
Shewanella oneidensis MR-1 0.53 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) 0.31 SO1314 peptidase, M23/M37 family (NCBI ptt file) low > 76
Castellaniella sp019104865 MT123 0.53 ABCV34_RS04635 ATP-dependent RNA helicase DbpA 0.27 ABCV34_RS10570 peptidoglycan DD-metalloendopeptidase family protein low > 48
Dickeya dianthicola ME23 0.53 DZA65_RS11470 ATP-dependent RNA helicase DbpA 0.18 DZA65_RS10550 murein DD-endopeptidase MepM low > 75
Shewanella loihica PV-4 0.53 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) 0.31 Shew_1021 peptidase M23B (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_12980 ATP-dependent RNA helicase DbpA 0.28 CSW01_03310 peptidase M23 low > 62
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_2047 ATP-dependent RNA helicase DbpA (EC 5.99.1.-) 0.32 B158DRAFT_0003 Membrane proteins related to metalloendopeptidases low > 40
Alteromonas macleodii MIT1002 0.43 MIT1002_03748 ATP-independent RNA helicase DbpA 0.29 MIT1002_03152 Glycyl-glycine endopeptidase ALE-1 precursor — —

Not shown: 44 genomes with orthologs for PS417_26370 only; 1 genomes with orthologs for PS417_25645 only