Conservation of cofitness between GFF1466 and GFF4846 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1466 Alkylphosphonate utilization operon protein PhnA 1.0 GFF4846 tRNA pseudouridine synthase C (EC 4.2.1.70) 0.68 6
Escherichia coli ECRC101 0.98 OKFHMN_12605 yjdM Protein YjdM 0.89 OKFHMN_20210 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli BW25113 0.98 b4108 phnA hypothetical protein (NCBI) 0.89 b2791 yqcB tRNA pseudouridine synthase (NCBI) low > 76
Escherichia coli ECRC102 0.98 NIAGMN_10450 yjdM Protein YjdM 0.89 NIAGMN_17980 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli ECRC101 0.98 MCAODC_03115 yjdM Protein YjdM 0.89 MCAODC_10735 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_03937 hypothetical protein 0.89 OHPLBJKB_00940 tRNA pseudouridine synthase C low > 73
Escherichia coli BL21 0.98 ECD_03979 zinc-ribbon family protein 0.89 ECD_02636 tRNA(Ile1,Asp) pseudouridine(65) synthase low > 60
Escherichia coli Nissle 1917 0.98 ECOLIN_RS23775 zinc ribbon domain-containing protein YjdM 0.88 ECOLIN_RS15550 tRNA pseudouridine(65) synthase TruC low > 52
Escherichia coli ECRC62 0.98 BNILDI_06620 yjdM Protein YjdM 0.88 BNILDI_10595 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia fergusonii Becca 0.98 EFB2_04475 hypothetical protein 0.88 EFB2_01126 tRNA pseudouridine synthase C low > 86
Escherichia coli ECRC99 0.98 KEDOAH_15560 yjdM Protein YjdM 0.89 KEDOAH_07920 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli ECOR27 0.98 NOLOHH_04870 yjdM Protein YjdM 0.88 NOLOHH_12090 truC tRNA pseudouridine(65) synthase TruC low > 57
Escherichia coli ECOR38 0.98 HEPCGN_11240 yjdM Protein YjdM 0.88 HEPCGN_19465 truC tRNA pseudouridine(65) synthase TruC low > 85
Escherichia coli ECRC98 0.98 JDDGAC_16240 yjdM Protein YjdM 0.89 JDDGAC_23875 truC tRNA pseudouridine(65) synthase TruC — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_4198 alkylphosphonate utilization operon protein PhnA 0.84 EX28DRAFT_2872 Pseudouridylate synthases, 23S RNA-specific — —
Enterobacter sp. TBS_079 0.95 MPMX20_00327 hypothetical protein 0.84 MPMX20_03661 tRNA pseudouridine synthase C low > 85
Klebsiella michiganensis M5al 0.93 BWI76_RS02240 alkylphosphonate utilization operon protein PhnA 0.87 BWI76_RS22850 tRNA pseudouridine synthase TruC low > 92
Serratia liquefaciens MT49 0.91 IAI46_06020 phnA family protein 0.69 IAI46_20290 tRNA pseudouridine(65) synthase TruC low > 86
Pectobacterium carotovorum WPP14 0.75 HER17_RS16190 alkylphosphonate utilization protein 0.71 HER17_RS16365 tRNA pseudouridine(65) synthase TruC low > 75
Dickeya dianthicola 67-19 0.74 HGI48_RS05390 alkylphosphonate utilization protein 0.70 HGI48_RS05085 tRNA pseudouridine(65) synthase TruC low > 71
Dickeya dianthicola ME23 0.74 DZA65_RS05690 alkylphosphonate utilization protein 0.70 DZA65_RS05425 tRNA pseudouridine(65) synthase TruC — —
Dickeya dadantii 3937 0.73 DDA3937_RS05305 alkylphosphonate utilization protein 0.71 DDA3937_RS05085 tRNA pseudouridine(65) synthase TruC low > 74
Rahnella sp. WP5 0.73 EX31_RS19010 alkylphosphonate utilization protein 0.68 EX31_RS13065 tRNA pseudouridine(65) synthase TruC low > 89
Pantoea sp. MT58 0.72 IAI47_04280 alkylphosphonate utilization protein 0.73 IAI47_04065 tRNA pseudouridine(65) synthase TruC low > 76
Erwinia tracheiphila SCR3 0.70 LU632_RS22225 alkylphosphonate utilization protein 0.67 LU632_RS06295 truC tRNA pseudouridine(65) synthase TruC low > 74
Marinobacter adhaerens HP15 0.69 HP15_843 PhnA protein 0.36 HP15_1021 tRNA pseudouridine synthase C low > 73
Mucilaginibacter yixingensis YX-36 DSM 26809 0.66 ABZR88_RS05120 zinc ribbon domain-containing protein YjdM 0.37 ABZR88_RS18680 pseudouridine synthase — —
Magnetospirillum magneticum AMB-1 0.62 AMB_RS18885 hypothetical protein 0.19 AMB_RS17255 RNA pseudouridine synthase low > 64
Shewanella loihica PV-4 0.62 Shew_1931 alkylphosphonate utilization operon protein PhnA (RefSeq) 0.46 Shew_2643 pseudouridylate synthase (RefSeq) low > 60
Pontibacter actiniarum KMM 6156, DSM 19842 0.58 CA264_00900 phosphonoacetate hydrolase 0.41 CA264_06180 pseudouridylate synthase low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.57 Echvi_3330 alkylphosphonate utilization operon protein PhnA 0.33 Echvi_3374 Pseudouridylate synthases, 23S RNA-specific low > 79
Alteromonas macleodii MIT1002 0.54 MIT1002_00555 putative alkylphosphonate utilization operon protein PhnA 0.46 MIT1002_00998 tRNA pseudouridine synthase C low > 70
Acidovorax sp. GW101-3H11 0.50 Ac3H11_4421 Alkylphosphonate utilization operon protein PhnA 0.36 Ac3H11_3112 tRNA pseudouridine synthase C (EC 4.2.1.70) — —
Dechlorosoma suillum PS 0.46 Dsui_0559 alkylphosphonate utilization operon protein PhnA 0.44 Dsui_3127 23S RNA-specific pseudouridylate synthase low > 51
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS00195 zinc ribbon domain-containing protein YjdM 0.37 ABZR86_RS13460 pseudouridine synthase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3628.1 Alkylphosphonate utilization operon protein PhnA 0.31 Xcc-8004.296.1 tRNA pseudouridine synthase C (EC 4.2.1.70) low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS11320 zinc ribbon domain-containing protein YjdM 0.30 ABIE51_RS00215 pseudouridine synthase low > 62
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS15710 alkylphosphonate utilization protein 0.36 LRK54_RS10630 pseudouridine synthase low > 59
Rhodanobacter denitrificans MT42 0.43 LRK55_RS15460 zinc ribbon domain-containing protein YjdM 0.37 LRK55_RS10270 pseudouridine synthase low > 63
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_04380 Phosphonoacetate hydrolase 0.38 OKGIIK_13270 pseudouridylate synthase low > 52

Not shown: 31 genomes with orthologs for GFF1466 only; 5 genomes with orthologs for GFF4846 only