Conservation of cofitness between GFF4282 and GFF4356 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4282 Protein YaiC 1.0 GFF4356 DNA-binding protein HU-beta 0.53 7
Escherichia coli BL21 0.78 ECD_00332 diguanylate cyclase, cellulose regualtor 0.98 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit low > 61
Escherichia coli Nissle 1917 0.78 ECOLIN_RS02340 diguanylate cyclase AdrA 0.99 ECOLIN_RS02640 nucleoid-associated protein HU-beta low > 55
Escherichia coli ECOR38 0.78 HEPCGN_07255 adrA diguanylate cyclase AdrA 0.99 HEPCGN_06930 hupB DNA-binding protein HU-beta low > 87
Escherichia coli BW25113 0.78 b0385 yaiC predicted diguanylate cyclase (NCBI) 0.98 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) low > 76
Escherichia coli ECRC100 0.78 OKFHMN_08615 adrA diguanylate cyclase AdrA 0.99 OKFHMN_08315 hupB DNA-binding protein HU-beta low > 80
Escherichia coli ECRC102 0.78 NIAGMN_06670 adrA diguanylate cyclase AdrA 0.99 NIAGMN_06370 hupB DNA-binding protein HU-beta — —
Escherichia coli ECRC101 0.78 MCAODC_27840 adrA diguanylate cyclase AdrA 0.99 MCAODC_27540 hupB DNA-binding protein HU-beta low > 87
Escherichia coli ECRC98 0.78 JDDGAC_12270 adrA diguanylate cyclase AdrA 0.99 JDDGAC_11970 hupB DNA-binding protein HU-beta low > 86
Escherichia coli ECRC99 0.78 KEDOAH_19350 adrA diguanylate cyclase AdrA 0.99 KEDOAH_19650 hupB DNA-binding protein HU-beta — —
Escherichia fergusonii Becca 0.78 EFB2_03671 putative diguanylate cyclase DgcC 0.98 EFB2_03617 DNA-binding protein HU-beta low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_03289 putative diguanylate cyclase DgcC 0.98 OHPLBJKB_03233 DNA-binding protein HU-beta low > 73
Escherichia coli ECOR27 0.78 NOLOHH_01540 adrA diguanylate cyclase AdrA 0.99 NOLOHH_01250 hupB DNA-binding protein HU-beta low > 75
Escherichia coli ECRC62 0.77 BNILDI_22955 adrA diguanylate cyclase AdrA 0.99 BNILDI_22665 hupB DNA-binding protein HU-beta low > 75
Enterobacter sp. TBS_079 0.64 MPMX20_00975 putative diguanylate cyclase DgcC 0.95 MPMX20_01031 DNA-binding protein HU-beta low > 85
Enterobacter asburiae PDN3 0.63 EX28DRAFT_2586 diguanylate cyclase (GGDEF) domain 0.95 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein low > 76
Pectobacterium carotovorum WPP14 0.45 HER17_RS14460 diguanylate cyclase AdrA 0.90 HER17_RS15835 DNA-binding protein HU-beta low > 75
Serratia liquefaciens MT49 0.44 IAI46_05890 diguanylate cyclase 0.93 IAI46_05025 DNA-binding protein HU-beta 0.43 12
Dickeya dadantii 3937 0.40 DDA3937_RS06830 diguanylate cyclase 0.89 DDA3937_RS05655 DNA-binding protein HU-beta low > 74
Pseudomonas putida KT2440 0.36 PP_1155 YaiC/YhcK/ArdA family protein 0.79 PP_2303 DNA binding regulator, beta subunit B — —
Pseudomonas fluorescens SBW25 0.34 PFLU_RS23435 diguanylate cyclase 0.74 PFLU_RS19155 HU family DNA-binding protein — —
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS23435 diguanylate cyclase 0.74 PFLU_RS19155 HU family DNA-binding protein — —
Pseudomonas sp. S08-1 0.34 OH686_04700 hypothetical protein 0.80 OH686_03630 DNA-binding protein HU-beta — —
Pseudomonas simiae WCS417 0.32 PS417_21835 histidine kinase 0.74 PS417_17220 transcriptional regulator HU subunit alpha — —
Pseudomonas stutzeri RCH2 0.31 Psest_1455 diguanylate cyclase (GGDEF) domain 0.80 Psest_2284 Bacterial nucleoid DNA-binding protein — —
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS14650 diguanylate cyclase 0.69 QEN71_RS21970 HU family DNA-binding protein — —
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_21315 histidine kinase 0.73 AO353_20190 DNA-binding protein HU — —
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS16875 diguanylate cyclase 0.69 HSERO_RS12900 transcriptional regulator HU subunit alpha — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_01080 histidine kinase 0.73 AO356_01735 DNA-binding protein HU — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_3763 GGDEF domain protein 0.73 Psyr_1750 bacterial nucleoid protein HU beta subunit — —
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_3763 GGDEF domain protein 0.73 Psyr_1750 bacterial nucleoid protein HU beta subunit — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS21525 hypothetical protein 0.51 RR42_RS20390 DNA-binding protein — —
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS19325 diguanylate cyclase 0.65 ABZR86_RS07315 HU family DNA-binding protein — —
Acidovorax sp. GW101-3H11 0.25 Ac3H11_3069 Response regulator containing a CheY-like receiver domain and a GGDEF domain 0.69 Ac3H11_376 DNA-binding protein HU-beta low > 79
Pantoea sp. MT58 0.24 IAI47_19665 diguanylate cyclase 0.85 IAI47_14640 DNA-binding protein HU-beta low > 76
Klebsiella michiganensis M5al 0.21 BWI76_RS21800 MASE2 domain/diguanylate cyclase 0.95 BWI76_RS06540 DNA-binding protein HU-beta low > 92
Rahnella sp. WP5 0.19 EX31_RS22990 diguanylate cyclase 0.89 EX31_RS22260 DNA-binding protein HU-beta low > 89

Not shown: 0 genomes with orthologs for GFF4282 only; 49 genomes with orthologs for GFF4356 only