Conservation of cofitness between Psest_1505 and Psest_3927 in Pseudomonas stutzeri RCH2

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1505 Organic radical activating enzymes 1.0 Psest_3927 thiazole biosynthesis/tRNA modification protein ThiI 0.24 17
Pseudomonas sp. S08-1 0.84 OH686_19175 7-carboxy-7-deazaguanine synthase 0.79 OH686_10615 tRNA 4-thiouridine synthase / Rhodanese-like domain required for thiamine synthesis low > 80
Pseudomonas sp. RS175 0.81 PFR28_03404 7-carboxy-7-deazaguanine synthase 0.83 PFR28_04950 tRNA sulfurtransferase — —
Pseudomonas fluorescens SBW25 0.80 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.82 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI — —
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.82 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI — —
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_18065 7-carboxy-7-deazaguanine synthase 0.82 AO356_09700 tRNA s(4)U8 sulfurtransferase — —
Pseudomonas putida KT2440 0.80 PP_1225 7-carboxy-7-deazaguanine synthase 0.81 PP_5045 tRNA sulfurtransferase low > 96
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_629 Queuosine Biosynthesis QueE Radical SAM 0.83 Pf1N1B4_1604 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis — —
Pseudomonas simiae WCS417 0.79 PS417_22405 7-carboxy-7-deazaguanine synthase 0.82 PS417_01660 tRNA s(4)U8 sulfurtransferase — —
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_1418 Radical SAM 0.81 Psyr_4816 [ThiS-adenylate] sulfurtransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_1418 Radical SAM 0.81 Psyr_4816 [ThiS-adenylate] sulfurtransferase — —
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_1861 Queuosine Biosynthesis QueE Radical SAM 0.83 PfGW456L13_341 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis — —
Pseudomonas fluorescens FW300-N2E3 0.79 AO353_03540 7-carboxy-7-deazaguanine synthase 0.83 AO353_12175 tRNA s(4)U8 sulfurtransferase — —
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_5545 Queuosine Biosynthesis QueE Radical SAM 0.83 Pf6N2E2_3819 Thiamine biosynthesis protein thiI — —
Serratia liquefaciens MT49 0.17 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE 0.51 IAI46_04940 tRNA 4-thiouridine(8) synthase ThiI low > 86
Shewanella amazonensis SB2B 0.16 Sama_1825 radical activating enzyme (RefSeq) 0.51 Sama_2431 thiamine biosynthesis protein ThiI (RefSeq) — —
Shewanella sp. ANA-3 0.16 Shewana3_2163 radical activating enzyme (RefSeq) 0.52 Shewana3_2896 thiamine biosynthesis protein ThiI (RefSeq) low > 73
Rahnella sp. WP5 0.16 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE 0.50 EX31_RS22170 tRNA 4-thiouridine(8) synthase ThiI low > 89
Pantoea sp. MT58 0.16 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE 0.50 IAI47_14725 tRNA 4-thiouridine(8) synthase ThiI low > 76
Enterobacter sp. TBS_079 0.16 MPMX20_03645 7-carboxy-7-deazaguanine synthase 0.49 MPMX20_01014 tRNA sulfurtransferase low > 85
Escherichia coli Nissle 1917 0.16 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE 0.50 ECOLIN_RS02550 tRNA uracil 4-sulfurtransferase ThiI — —
Escherichia fergusonii Becca 0.16 EFB2_01141 7-carboxy-7-deazaguanine synthase 0.51 EFB2_03634 tRNA sulfurtransferase low > 86
Escherichia coli ECOR38 0.16 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE 0.50 HEPCGN_07035 thiI tRNA sulfurtransferase low > 85
Pectobacterium carotovorum WPP14 0.16 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE 0.52 HER17_RS15920 tRNA 4-thiouridine(8) synthase ThiI low > 75
Enterobacter asburiae PDN3 0.15 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 0.50 EX28DRAFT_2548 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain low > 76
Escherichia coli ECRC101 0.15 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE 0.52 OKFHMN_08405 thiI tRNA sulfurtransferase — —
Escherichia coli BL21 0.15 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis 0.50 ECD_00371 tRNA s(4)U8 sulfurtransferase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.15 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase 0.50 OHPLBJKB_03253 tRNA sulfurtransferase low > 73
Escherichia coli ECRC98 0.15 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE 0.52 JDDGAC_12060 thiI tRNA sulfurtransferase — —
Escherichia coli BW25113 0.15 b2777 ygcF hypothetical protein (NCBI) 0.50 b0423 thiI thiamine biosynthesis protein ThiI (NCBI) low > 76
Escherichia coli ECRC99 0.15 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE 0.52 KEDOAH_19560 thiI tRNA sulfurtransferase — —
Escherichia coli ECRC101 0.15 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE 0.52 MCAODC_27630 thiI tRNA sulfurtransferase — —
Escherichia coli ECRC102 0.15 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE 0.52 NIAGMN_06460 thiI tRNA sulfurtransferase — —
Erwinia tracheiphila SCR3 0.15 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE 0.51 LU632_RS18845 thiI tRNA 4-thiouridine(8) synthase ThiI low > 74
Klebsiella michiganensis M5al 0.15 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE 0.50 BWI76_RS06395 tRNA 4-thiouridine(8) synthase ThiI low > 92
Escherichia coli ECRC62 0.15 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE 0.51 BNILDI_22770 thiI tRNA sulfurtransferase — —
Escherichia coli ECOR27 0.15 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE 0.50 NOLOHH_01355 thiI tRNA sulfurtransferase low > 57

Not shown: 16 genomes with orthologs for Psest_1505 only; 8 genomes with orthologs for Psest_3927 only