Conservation of cofitness between GFF4864 and GFF3726 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4864 COG2363 1.0 GFF3726 YheO-like PAS domain 0.65 13
Escherichia coli ECOR38 0.93 HEPCGN_19380 ygdD DUF423 domain-containing protein 0.98 HEPCGN_16130 yheO Uncharacterized protein YheO low > 87
Escherichia coli ECRC62 0.93 BNILDI_10510 ygdD UPF0382 inner membrane protein YgdD 0.99 BNILDI_02420 yheO Uncharacterized protein YheO low > 75
Escherichia coli ECRC100 0.93 OKFHMN_20125 ygdD UPF0382 inner membrane protein YgdD 0.99 OKFHMN_17300 yheO Uncharacterized protein YheO low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_00924 hypothetical protein 0.99 OHPLBJKB_00357 Transcriptional regulator DauR low > 73
Escherichia coli ECRC98 0.93 JDDGAC_23790 ygdD UPF0382 inner membrane protein YgdD 0.99 JDDGAC_20930 yheO Uncharacterized protein YheO low > 86
Escherichia coli BW25113 0.93 b2807 ygdD conserved inner membrane protein (NCBI) 0.99 b3346 yheO orf, hypothetical protein (VIMSS) low > 76
Escherichia coli Nissle 1917 0.93 ECOLIN_RS15645 DUF423 domain-containing protein 0.99 ECOLIN_RS19165 transcriptional regulator low > 55
Escherichia coli ECRC101 0.93 MCAODC_10650 ygdD UPF0382 inner membrane protein YgdD 0.99 MCAODC_07830 yheO Uncharacterized protein YheO low > 87
Escherichia coli ECRC102 0.93 NIAGMN_17895 ygdD UPF0382 inner membrane protein YgdD 0.99 NIAGMN_15070 yheO Uncharacterized protein YheO — —
Escherichia coli BL21 0.93 ECD_02658 UPF0382 family inner membrane protein 0.99 ECD_03197 putative PAS domain-containing DNA-binding transcriptional regulator low > 61
Escherichia fergusonii Becca 0.93 EFB2_01110 hypothetical protein 0.99 EFB2_00477 Transcriptional regulator DauR low > 86
Escherichia coli ECOR27 0.93 NOLOHH_12005 ygdD UPF0382 inner membrane protein YgdD 0.99 NOLOHH_09100 yheO Uncharacterized protein YheO low > 75
Escherichia coli ECRC99 0.93 KEDOAH_08005 ygdD UPF0382 inner membrane protein YgdD 0.99 KEDOAH_10840 yheO Uncharacterized protein YheO — —
Enterobacter sp. TBS_079 0.91 MPMX20_03670 hypothetical protein 0.98 MPMX20_04239 Transcriptional regulator DauR low > 85
Klebsiella michiganensis M5al 0.91 BWI76_RS22950 membrane protein 0.95 BWI76_RS25905 hypothetical protein low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2882 Uncharacterized small membrane protein 0.98 EX28DRAFT_4184 Uncharacterized protein conserved in bacteria low > 76
Pectobacterium carotovorum WPP14 0.82 HER17_RS16410 DUF423 domain-containing protein 0.88 HER17_RS02010 transcriptional regulator low > 75
Serratia liquefaciens MT49 0.78 IAI46_20335 DUF423 domain-containing protein 0.88 IAI46_23490 transcriptional regulator low > 86
Pantoea sp. MT58 0.75 IAI47_04030 DUF423 domain-containing protein 0.87 IAI47_02055 transcriptional regulator low > 76
Rahnella sp. WP5 0.75 EX31_RS13105 DUF423 domain-containing protein 0.89 EX31_RS04470 transcriptional regulator low > 89
Erwinia tracheiphila SCR3 0.73 LU632_RS06260 DUF423 domain-containing protein 0.87 LU632_RS22710 transcriptional regulator low > 74
Dickeya dadantii 3937 0.71 DDA3937_RS05055 DUF423 domain-containing protein 0.89 DDA3937_RS19340 transcriptional regulator low > 74
Dickeya dianthicola ME23 0.66 DZA65_RS05395 DUF423 domain-containing protein 0.89 DZA65_RS20560 transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS05055 DUF423 domain-containing protein 0.89 HGI48_RS19440 transcriptional regulator low > 71
Pseudomonas putida KT2440 0.33 PP_5106 conserved inner membrane protein 0.13 PP_2931 conserved protein of unknown function low > 96
Pseudomonas sp. S08-1 0.33 OH686_14275 hypothetical regulator 0.11 OH686_07030 YheO-like PAS domain low > 80
Pseudomonas simiae WCS417 0.32 PS417_26785 membrane protein 0.13 PS417_10905 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.31 PFLU_RS28430 DUF423 domain-containing protein 0.14 PFLU_RS13585 DNA-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS28430 DUF423 domain-containing protein 0.14 PFLU_RS13585 DNA-binding protein low > 109
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS06075 membrane protein 0.13 HSERO_RS01425 DNA-binding protein low > 78
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_4588 COG2363 0.14 Pf6N2E2_5396 YheO-like PAS domain low > 103
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_08225 hypothetical protein 0.15 AO353_04640 hypothetical protein low > 101
Shewanella oneidensis MR-1 0.28 SO1535 conserved hypothetical protein (NCBI ptt file) 0.34 SO1402 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_13365 hypothetical protein 0.13 AO356_17355 hypothetical protein low > 104
Pseudomonas sp. RS175 0.27 PFR28_04254 hypothetical protein 0.12 PFR28_03547 Transcriptional regulator DauR low > 88
Shewanella sp. ANA-3 0.27 Shewana3_2892 hypothetical protein (RefSeq) 0.34 Shewana3_2973 YheO domain-containing protein (RefSeq) low > 73
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_2329 COG2363 0.15 Pf1N1B4_923 YheO-like PAS domain low > 87
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_998 COG2363 0.15 PfGW456L13_1693 YheO-like PAS domain low > 87
Vibrio cholerae E7946 ATCC 55056 0.23 CSW01_04595 DUF423 domain-containing protein 0.64 CSW01_01875 hypothetical protein low > 62

Not shown: 18 genomes with orthologs for GFF4864 only; 15 genomes with orthologs for GFF3726 only