Conservation of cofitness between PS417_01120 and PS417_17700 in Pseudomonas simiae WCS417

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_01120 choline transporter 1.0 PS417_17700 LysR family transcriptional regulator 0.17 16
Pseudomonas fluorescens SBW25 0.99 PFLU_RS01230 BCCT family transporter 0.98 PFLU_RS19485 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS01230 BCCT family transporter 0.98 PFLU_RS19485 LysR family transcriptional regulator low > 109
Pseudomonas lactucae CFBP13502 0.99 GEMAOFIL_00450 Osmo-dependent choline transporter BetT2 0.96 GEMAOFIL_03820 HTH-type transcriptional regulator HdfR low > 93
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_11690 choline transporter 0.87 AO353_22745 LysR family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2C3 0.95 AO356_10225 choline transporter 0.80 AO356_00585 LysR family transcriptional regulator low > 104
Pseudomonas sp. DMC3 0.95 GFF4195 Osmo-dependent choline transporter BetT2 0.82 GFF3699 HTH-type transcriptional regulator HdfR low > 89
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_3917 High-affinity choline uptake protein BetT 0.80 Pf6N2E2_2079 HTH-type transcriptional regulator hdfR low > 103
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_439 High-affinity choline uptake protein BetT 0.82 PfGW456L13_2837 HTH-type transcriptional regulator hdfR low > 87
Pseudomonas sp. RS175 0.93 PFR28_04857 Osmo-dependent choline transporter BetT2 0.80 PFR28_01360 HTH-type transcriptional regulator HdfR low > 88
Pseudomonas sp. SVBP6 0.85 COO64_RS00785 betT choline transporter BetT 0.75 COO64_RS07955 LysR family transcriptional regulator low > 93
Pseudomonas sp. BP01 0.83 JOY50_RS18435 betT choline transporter BetT 0.73 JOY50_RS10870 LysR family transcriptional regulator low > 84
Pseudomonas putida KT2440 0.83 PP_0229 choline/carnitine/betaine transporter 0.74 PP_2350 LysR family transcriptional regulator low > 96
Pseudomonas aeruginosa PA14 0.79 IKLFDK_20290 choline transporter 0.74 IKLFDK_09025 LysR family transcriptional regulator low > 100
Serratia liquefaciens MT49 0.45 IAI46_08955 choline BCCT transporter BetT 0.19 IAI46_24385 HTH-type transcriptional regulator HdfR low > 86
Pantoea agglomerans CFBP13505 P0401 0.45 PagCFBP13505_RS01605 BCCT family transporter 0.18 PagCFBP13505_RS20965 HTH-type transcriptional regulator HdfR low > 74
Pseudomonas stutzeri RCH2 0.45 Psest_3776 choline/carnitine/betaine transport 0.67 Psest_0802 Transcriptional regulator low > 67
Pantoea sp. MT58 0.45 IAI47_08660 choline transporter 0.18 IAI47_01000 HTH-type transcriptional regulator HdfR low > 76
Klebsiella michiganensis M5al 0.44 BWI76_RS07630 high-affinity choline transporter BetT 0.18 BWI76_RS00940 transcriptional regulator HdfR low > 92
Escherichia coli ECRC102 0.44 NIAGMN_07090 betT choline BCCT transporter BetT 0.18 NIAGMN_12430 hdfR HTH-type transcriptional regulator HdfR low > 80
Escherichia coli ECRC98 0.44 JDDGAC_12685 betT choline BCCT transporter BetT 0.18 JDDGAC_18295 hdfR HTH-type transcriptional regulator HdfR low > 87
Escherichia coli ECOR38 0.44 HEPCGN_07595 betT choline BCCT transporter BetT 0.17 HEPCGN_13385 hdfR HTH-type transcriptional regulator HdfR low > 88
Escherichia coli ECRC99 0.44 KEDOAH_18930 betT choline BCCT transporter BetT 0.18 KEDOAH_13475 hdfR HTH-type transcriptional regulator HdfR — —
Escherichia coli BW25113 0.44 b0314 betT choline transporter of high affinity (NCBI) 0.18 b4480 hdfR transcriptional regulator HdfR (NCBI) low > 76
Escherichia coli Nissle 1917 0.44 ECOLIN_RS02065 choline BCCT transporter BetT 0.18 ECOLIN_RS21630 HTH-type transcriptional regulator HdfR low > 55
Escherichia coli ECOR27 0.44 NOLOHH_01885 betT choline BCCT transporter BetT 0.18 NOLOHH_06810 hdfR HTH-type transcriptional regulator HdfR low > 76
Escherichia coli ECRC101 0.44 MCAODC_28260 betT choline BCCT transporter BetT 0.18 MCAODC_05180 hdfR HTH-type transcriptional regulator HdfR low > 88
Escherichia coli BL21 0.44 ECD_00270 choline transporter of high affinity 0.18 ECD_03642 flhDC operon transcriptional repressor low > 61
Escherichia coli ECRC62 0.44 BNILDI_00010 betT choline BCCT transporter BetT 0.18 BNILDI_04715 hdfR HTH-type transcriptional regulator HdfR low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_03361 High-affinity choline transport protein 0.18 OHPLBJKB_04288 HTH-type transcriptional regulator HdfR low > 74
Escherichia coli ECRC100 0.44 OKFHMN_09035 betT choline BCCT transporter BetT 0.18 OKFHMN_14675 hdfR HTH-type transcriptional regulator HdfR low > 79
Escherichia fergusonii Becca 0.44 EFB2_03721 High-affinity choline transport protein 0.18 EFB2_04871 HTH-type transcriptional regulator HdfR low > 86
Rahnella sp. WP5 0.44 EX31_RS18830 choline transporter 0.19 EX31_RS14970 HTH-type transcriptional regulator HdfR low > 89
Pectobacterium carotovorum WPP14 0.44 HER17_RS08380 choline transporter 0.20 HER17_RS01040 HTH-type transcriptional regulator HdfR low > 75
Klebsiella pneumoniae MKP103 0.44 KDGMDA_15975 choline BCCT transporter BetT 0.17 KDGMDA_09455 HTH-type transcriptional regulator HdfR low > 95
Shewanella amazonensis SB2B 0.40 Sama_1175 choline/carnitine/betaine transport (RefSeq) 0.24 Sama_1997 LysR family transcriptional regulator (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.39 MIT1002_01810 High-affinity choline transport protein 0.16 MIT1002_02368 HTH-type transcriptional activator AllS low > 70
Shewanella sp. ANA-3 0.39 Shewana3_2719 choline/carnitine/betaine transporter (RefSeq) 0.23 Shewana3_2403 LysR family transcriptional regulator (RefSeq) low > 73
Sinorhizobium meliloti 1021 0.38 SM_b20333 transporter protein 0.38 SMc02596 transcriptional regulator low > 103

Not shown: 12 genomes with orthologs for PS417_01120 only; 11 genomes with orthologs for PS417_17700 only