Conservation of cofitness between PS417_26545 and PS417_17205 in Pseudomonas simiae WCS417

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_26545 16S rRNA methyltransferase 1.0 PS417_17205 LysR family transcriptional regulator 0.24 5
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.91 PFLU_RS19135 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.93 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.91 PFLU_RS19135 LysR family transcriptional regulator low > 109
Pseudomonas sp. RS175 0.89 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.48 PFR28_02009 HTH-type transcriptional regulator PgrR low > 88
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_13565 16S rRNA methyltransferase 0.62 AO356_26885 LysR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.58 Pf1N1B4_4897 Transcriptional regulator, LysR family — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.60 Pf6N2E2_1182 Transcriptional regulator, LysR family low > 103
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.60 Psyr_3062 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.60 Psyr_3062 transcriptional regulator, LysR family low > 86
Rahnella sp. WP5 0.43 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.58 EX31_RS20705 LysR family transcriptional regulator low > 89
Serratia liquefaciens MT49 0.42 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.58 IAI46_12105 LysR family transcriptional regulator low > 86
Klebsiella michiganensis M5al 0.41 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.31 BWI76_RS27965 LysR family transcriptional regulator low > 92
Pectobacterium carotovorum WPP14 0.41 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.59 HER17_RS03305 LysR family transcriptional regulator low > 75
Enterobacter sp. TBS_079 0.40 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.30 MPMX20_00005 HTH-type transcriptional regulator PgrR 0.23 69
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 ABZR86_RS14400 LysR family transcriptional regulator 0.39 31
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS17590 16S rRNA methyltransferase 0.64 RR42_RS26575 LysR family transcriptional regulator low > 128
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS16855 16S rRNA methyltransferase 0.54 BPHYT_RS20380 LysR family transcriptional regulator low > 109
Paraburkholderia graminis OAS925 0.32 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase 0.45 ABIE53_001468 DNA-binding transcriptional LysR family regulator low > 113
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.51 QEN71_RS13435 LysR family transcriptional regulator low > 153
Variovorax sp. SCN45 0.31 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) 0.50 GFF2735 Transcriptional regulator, LysR family low > 127
Azospirillum sp. SherDot2 0.23 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E 0.59 MPMX19_06917 HTH-type transcriptional regulator PgrR 0.49 7
Azospirillum brasilense Sp245 0.21 AZOBR_RS11890 16S rRNA methyltransferase 0.60 AZOBR_RS21020 LysR family transcriptional regulator — —
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_0807 RNA methyltransferase, RsmE family 0.50 Ga0059261_0141 transcriptional regulator, LysR family low > 68
Rhizobium sp. OAE497 0.19 ABIE40_RS03520 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 ABIE40_RS04915 LysR family transcriptional regulator low > 107
Agrobacterium fabrum C58 0.18 Atu0657 hypothetical protein 0.51 Atu4271 LysR family transcriptional regulator low > 89

Not shown: 75 genomes with orthologs for PS417_26545 only; 1 genomes with orthologs for PS417_17205 only