| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_3743 | | Regulator of sigma D | 1.0 | Psest_3003 | | Transcriptional regulator | 0.25 | 14 |
| Pseudomonas sp. S08-1 | 0.69 | OH686_13925 | | Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD | 0.78 | OH686_18470 | | Transcriptional regulator, LysR family | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.64 | Psyr_0056 | | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ | 0.40 | Psyr_2480 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.64 | Psyr_0056 | | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ | 0.40 | Psyr_2480 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.63 | PfGW456L13_861 | | Regulator of sigma D | 0.34 | PfGW456L13_436 | | Transcriptional regulator, LysR family | low | > 87 |
| Pseudomonas sp. RS175 | 0.63 | PFR28_04361 | | Regulator of sigma D | 0.77 | PFR28_02560 | | HTH-type transcriptional regulator PgrR | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.63 | Pf6N2E2_4435 | | Regulator of sigma D | 0.79 | Pf6N2E2_348 | | Transcriptional regulator, LysR family | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.63 | AO353_08965 | | transcriptional regulator | 0.49 | AO353_28585 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2190 | | Regulator of sigma D | 0.38 | Pf1N1B4_4694 | | Transcriptional regulator, LysR family | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_12810 | | transcriptional regulator | 0.78 | AO356_22390 | | LysR family transcriptional regulator | low | > 104 |
| Pseudomonas simiae WCS417 | 0.58 | PS417_27505 | | transcriptional regulator | 0.39 | PS417_14435 | | transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS29185 | | Rsd/AlgQ family anti-sigma factor | 0.40 | PFLU_RS16370 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS29185 | | Rsd/AlgQ family anti-sigma factor | 0.40 | PFLU_RS16370 | | LysR family transcriptional regulator | low | > 109 |
| Shewanella sp. ANA-3 | 0.33 | Shewana3_0434 | | anti-RNA polymerase sigma 70 factor (RefSeq) | 0.35 | Shewana3_0248 | | LysR family transcriptional regulator (RefSeq) | low | > 73 |
| Rahnella sp. WP5 | 0.28 | EX31_RS16820 | | Rsd/AlgQ family anti-sigma factor | 0.40 | EX31_RS12035 | | LysR family transcriptional regulator | low | > 89 |
| Klebsiella michiganensis M5al | 0.27 | BWI76_RS01560 | | Rsd/AlgQ family anti-sigma factor | 0.71 | BWI76_RS18480 | | LysR family transcriptional regulator | low | > 92 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_01325 | | Rsd/AlgQ family anti-sigma factor | 0.39 | IAI46_06995 | | LysR family transcriptional regulator | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.26 | CSW01_01710 | | Rsd/AlgQ family anti-sigma factor | 0.24 | CSW01_05340 | | LysR family transcriptional regulator | low | > 62 |
| Enterobacter sp. TBS_079 | 0.24 | MPMX20_00218 | | Regulator of sigma D | 0.46 | MPMX20_02362 | | HTH-type transcriptional regulator PgrR | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.24 | GFF4197 | | Regulator of sigma D | 0.36 | GFF2673 | | Probable transcription regulator protein of MDR efflux pump cluster | low | > 78 |
| Pantoea sp. MT58 | 0.24 | IAI47_18080 | | Rsd/AlgQ family anti-sigma factor | 0.36 | IAI47_21090 | | LysR family transcriptional regulator | low | > 76 |
| Escherichia coli ECOR38 | 0.24 | HEPCGN_12005 | rsd | sigma D regulator | 0.30 | HEPCGN_15135 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | low | > 85 |
| Escherichia coli ECRC101 | 0.24 | MCAODC_03870 | rsd | sigma D regulator | 0.31 | MCAODC_06745 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | — | — |
| Escherichia coli ECRC101 | 0.24 | OKFHMN_13370 | rsd | sigma D regulator | 0.31 | OKFHMN_16230 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.24 | OHPLBJKB_04055 | | Regulator of sigma D | 0.30 | OHPLBJKB_00181 | | HTH-type transcriptional regulator DmlR | low | > 73 |
| Escherichia coli BW25113 | 0.24 | b3995 | rsd | stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) | 0.30 | b3521 | yhjC | predicted DNA-binding transcriptional regulator (RefSeq) | low | > 76 |
| Escherichia coli BL21 | 0.24 | ECD_03872 | | stationary phase protein, binds sigma 70 RNA polymerase subunit | 0.30 | ECD_03369 | | LysR family putative transcriptional regulator | low | > 60 |
| Escherichia coli ECRC62 | 0.24 | BNILDI_06010 | rsd | sigma D regulator | 0.30 | BNILDI_03360 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | — | — |
| Escherichia coli ECRC98 | 0.24 | JDDGAC_16995 | rsd | sigma D regulator | 0.31 | JDDGAC_19860 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | — | — |
| Escherichia coli ECRC99 | 0.24 | KEDOAH_14790 | rsd | sigma D regulator | 0.31 | KEDOAH_11915 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | — | — |
| Escherichia coli ECOR27 | 0.24 | NOLOHH_05515 | rsd | sigma D regulator | 0.30 | NOLOHH_08195 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | low | > 57 |
| Escherichia coli ECRC102 | 0.24 | NIAGMN_11120 | rsd | sigma D regulator | 0.31 | NIAGMN_13995 | yhjC | Uncharacterized HTH-type transcriptional regulator YhjC | — | — |
| Enterobacter asburiae PDN3 | 0.24 | EX28DRAFT_4537 | | Regulator of sigma D | 0.72 | EX28DRAFT_0569 | | Transcriptional regulator | low | > 76 |
| Escherichia fergusonii Becca | 0.23 | EFB2_04616 | | Regulator of sigma D | 0.31 | EFB2_00287 | | HTH-type transcriptional regulator DmlR | low | > 86 |
| Escherichia coli Nissle 1917 | 0.23 | ECOLIN_RS23045 | | sigma D regulator | 0.31 | ECOLIN_RS20140 | | LysR family transcriptional regulator | low | > 52 |
| Pectobacterium carotovorum WPP14 | 0.23 | HER17_RS20375 | | Rsd/AlgQ family anti-sigma factor | 0.35 | HER17_RS18070 | | LysR family transcriptional regulator | low | > 75 |
| Dickeya dianthicola 67-19 | 0.18 | HGI48_RS01175 | | sigma D regulator | 0.40 | HGI48_RS03975 | | LysR family transcriptional regulator | low | > 71 |
| Dickeya dianthicola ME23 | 0.18 | DZA65_RS01220 | | Rsd/AlgQ family anti-sigma factor | 0.34 | DZA65_RS03395 | | LysR family transcriptional regulator | low | > 75 |
| Dickeya dadantii 3937 | 0.18 | DDA3937_RS01180 | | Rsd/AlgQ family anti-sigma factor | 0.34 | DDA3937_RS03200 | | LysR family transcriptional regulator | low | > 74 |
Not shown: 7 genomes with orthologs for Psest_3743 only; 28 genomes with orthologs for Psest_3003 only