Conservation of cofitness between GFF3027 and GFF2462 in Hydrogenophaga sp. GW460-11-11-14-LB1

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3027 Tricarboxylate transport transcriptional regulator TctD 1.0 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.43 15
Variovorax sp. SCN45 0.66 GFF2604 Tricarboxylate transport transcriptional regulator TctD 0.61 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) — —
Acidovorax sp. GW101-3H11 0.65 Ac3H11_114 Tricarboxylate transport transcriptional regulator TctD 0.56 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 79
Ralstonia solanacearum UW163 0.55 UW163_RS06855 DNA-binding response regulator 0.39 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS06760 DNA-binding response regulator 0.39 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Ralstonia solanacearum PSI07 0.54 RPSI07_RS10475 DNA-binding response regulator 0.39 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS20630 transcriptional regulator 0.41 RR42_RS17590 16S rRNA methyltransferase low > 128
Ralstonia solanacearum GMI1000 0.50 RS_RS14705 DNA-binding response regulator 0.39 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS02415 response regulator 0.39 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Rhizobium sp. OAE497 0.47 ABIE40_RS23395 response regulator 0.16 ABIE40_RS03520 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 107
Klebsiella michiganensis M5al 0.47 BWI76_RS20030 DNA-binding response regulator 0.32 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 92
Enterobacter sp. TBS_079 0.46 MPMX20_03192 Transcriptional regulatory protein tctD 0.32 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E low > 85
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_3965 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.36 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_3965 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.36 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS22665 transcriptional regulator 0.38 HSERO_RS07110 16S rRNA methyltransferase low > 78
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF1558 Tricarboxylate transport transcriptional regulator TctD 0.33 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 78
Dickeya dianthicola ME23 0.43 DZA65_RS15390 transcriptional regulator TctD 0.33 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Dickeya dianthicola 67-19 0.43 HGI48_RS14455 transcriptional regulator TctD 0.32 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 71
Dickeya dadantii 3937 0.42 DDA3937_RS14485 transcriptional regulator TctD 0.33 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_02602 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain 0.45 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase low > 103
Pantoea sp. MT58 0.42 IAI47_06215 transcriptional regulator TctD 0.31 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS15285 response regulator 0.44 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 153
Paraburkholderia graminis OAS925 0.41 ABIE53_004452 two-component system response regulator TctD 0.43 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS20115 transcriptional regulator 0.41 BPHYT_RS16855 16S rRNA methyltransferase low > 109
Shewanella loihica PV-4 0.33 Shew_2348 two component transcriptional regulator (RefSeq) 0.29 Shew_3224 hypothetical protein (RefSeq) — —

Not shown: 1 genomes with orthologs for GFF3027 only; 72 genomes with orthologs for GFF2462 only