Conservation of cofitness between GFF1652 and GFF2348 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1652 tRNA (5-methoxyuridine) 34 synthase 1.0 GFF2348 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) 0.41 14
Escherichia coli ECRC62 0.94 BNILDI_15455 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.98 BNILDI_05830 sthA Si-specific NAD(P)(+) transhydrogenase low > 75
Escherichia coli BL21 0.94 ECD_01842 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent 0.98 ECD_03847 pyridine nucleotide transhydrogenase, soluble low > 61
Escherichia coli ECOR38 0.94 HEPCGN_04630 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.98 HEPCGN_12205 sthA Si-specific NAD(P)(+) transhydrogenase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.94 OHPLBJKB_01857 tRNA U34 carboxymethyltransferase 0.98 OHPLBJKB_04088 Soluble pyridine nucleotide transhydrogenase low > 73
Escherichia coli ECRC98 0.94 JDDGAC_00795 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.98 JDDGAC_17185 sthA Si-specific NAD(P)(+) transhydrogenase low > 86
Escherichia coli ECRC101 0.94 MCAODC_19185 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.98 MCAODC_04060 sthA Si-specific NAD(P)(+) transhydrogenase low > 87
Escherichia coli ECRC100 0.94 OKFHMN_26220 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.98 OKFHMN_13560 sthA Si-specific NAD(P)(+) transhydrogenase — —
Escherichia coli ECRC99 0.94 KEDOAH_01885 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.98 KEDOAH_14600 sthA Si-specific NAD(P)(+) transhydrogenase — —
Escherichia coli ECRC102 0.94 NIAGMN_01840 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.97 NIAGMN_11310 sthA Si-specific NAD(P)(+) transhydrogenase — —
Escherichia coli ECOR27 0.94 NOLOHH_16665 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.98 NOLOHH_05695 sthA Si-specific NAD(P)(+) transhydrogenase low > 75
Escherichia coli BW25113 0.94 b1871 yecP predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) 0.98 b3962 udhA putative oxidoreductase (VIMSS) low > 76
Escherichia coli Nissle 1917 0.94 ECOLIN_RS10700 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.97 ECOLIN_RS22875 Si-specific NAD(P)(+) transhydrogenase — —
Escherichia fergusonii Becca 0.94 EFB2_02071 tRNA U34 carboxymethyltransferase 0.98 EFB2_04650 Soluble pyridine nucleotide transhydrogenase low > 86
Enterobacter sp. TBS_079 0.92 MPMX20_02776 tRNA U34 carboxymethyltransferase 0.99 MPMX20_04518 Soluble pyridine nucleotide transhydrogenase low > 85
Enterobacter asburiae PDN3 0.90 EX28DRAFT_0686 tRNA (mo5U34)-methyltransferase 0.98 EX28DRAFT_4425 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes low > 76
Klebsiella michiganensis M5al 0.88 BWI76_RS18195 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.97 BWI76_RS00870 NAD(P)(+) transhydrogenase — —
Serratia liquefaciens MT49 0.82 IAI46_14675 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.87 IAI46_24470 Si-specific NAD(P)(+) transhydrogenase low > 86
Dickeya dianthicola ME23 0.81 DZA65_RS10475 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.87 DZA65_RS21445 Si-specific NAD(P)(+) transhydrogenase low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS10065 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.87 HGI48_RS20400 Si-specific NAD(P)(+) transhydrogenase low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS10035 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.87 DDA3937_RS00975 Si-specific NAD(P)(+) transhydrogenase low > 74
Erwinia tracheiphila SCR3 0.80 LU632_RS13460 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.92 LU632_RS19585 sthA Si-specific NAD(P)(+) transhydrogenase low > 74
Rahnella sp. WP5 0.78 EX31_RS17290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.86 EX31_RS14165 Si-specific NAD(P)(+) transhydrogenase low > 89
Pectobacterium carotovorum WPP14 0.76 HER17_RS11890 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.87 HER17_RS00960 Si-specific NAD(P)(+) transhydrogenase low > 75
Pantoea sp. MT58 0.74 IAI47_08405 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.91 IAI47_00935 Si-specific NAD(P)(+) transhydrogenase low > 76
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_05895 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.79 CSW01_00765 Si-specific NAD(P)(+) transhydrogenase 0.54 55
Alteromonas macleodii MIT1002 0.59 MIT1002_02226 tRNA (mo5U34)-methyltransferase 0.72 MIT1002_03373 Soluble pyridine nucleotide transhydrogenase low > 70
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_06450 tRNA (mo5U34)-methyltransferase 0.62 AO356_02250 pyridine nucleotide-disulfide oxidoreductase low > 104
Pseudomonas sp. RS175 0.54 PFR28_00318 tRNA U34 carboxymethyltransferase 0.62 PFR28_01127 Soluble pyridine nucleotide transhydrogenase low > 88
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_3158 tRNA (5-methoxyuridine) 34 synthase 0.61 Pf6N2E2_2274 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) low > 103
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_16015 tRNA (mo5U34)-methyltransferase 0.61 AO353_00390 pyridine nucleotide-disulfide oxidoreductase — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_826 tRNA (5-methoxyuridine) 34 synthase 0.62 Pf1N1B4_3919 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4812 tRNA (5-methoxyuridine) 34 synthase 0.62 PfGW456L13_4024 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) — —
Pseudomonas putida KT2440 0.53 PP_1440 tRNA (mo5U34)-methyltransferase 0.62 PP_2151 soluble pyridine nucleotide transhydrogenase — —
Pseudomonas fluorescens SBW25 0.53 PFLU_RS05290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.62 PFLU_RS07725 Si-specific NAD(P)(+) transhydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS05290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.62 PFLU_RS07725 Si-specific NAD(P)(+) transhydrogenase low > 109
Pseudomonas simiae WCS417 0.53 PS417_05220 tRNA methyltransferase 0.62 PS417_07650 pyridine nucleotide-disulfide oxidoreductase — —
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_3947 Methyltransferase, putative 0.63 Psyr_1901 FAD-dependent pyridine nucleotide-disulfide oxidoreductase:Pyridine nucleotide-disulfide oxidoreductase dimerization region — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_3947 Methyltransferase, putative 0.63 Psyr_1901 FAD-dependent pyridine nucleotide-disulfide oxidoreductase:Pyridine nucleotide-disulfide oxidoreductase dimerization region — —
Marinobacter adhaerens HP15 0.51 HP15_2493 methyltransferase 0.61 HP15_2245 soluble pyridine nucleotide transhydrogenase — —
Pseudomonas sp. S08-1 0.51 OH686_05375 tRNA (mo5U34)-methyltransferase 0.63 OH686_22005 Soluble pyridine nucleotide transhydrogenase low > 80
Pseudomonas stutzeri RCH2 0.51 Psest_3085 methyltransferase, putative 0.63 Psest_1663 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes low > 67

Not shown: 5 genomes with orthologs for GFF1652 only; 6 genomes with orthologs for GFF2348 only