Conservation of cofitness between GFF2221 and GFF2133 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2221 Nitrogen regulation protein NtrB (EC 2.7.13.3) 1.0 GFF2133 RNase E specificity factor CsrD 0.94 7
Klebsiella michiganensis M5al 0.94 BWI76_RS00390 two-component system sensor histidine kinase NtrB 0.78 BWI76_RS25505 RNase E specificity factor CsrD 0.44 80
Escherichia coli BL21 0.94 ECD_03754 sensory histidine kinase in two-component regulatory system with GlnG 0.86 ECD_03111 targeting factor for csrBC sRNA degradation low > 61
Escherichia coli BW25113 0.94 b3869 glnL sensory histidine kinase in two-component regulatory system with GlnG (NCBI) 0.86 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC101 0.94 MCAODC_04605 glnL nitrogen regulation protein NR(II) 0.86 MCAODC_08240 csrD RNase E specificity factor CsrD low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.94 OHPLBJKB_04183 Sensory histidine kinase/phosphatase NtrB 0.86 OHPLBJKB_00453 RNase E specificity factor CsrD low > 73
Escherichia coli ECRC99 0.94 KEDOAH_14045 glnL nitrogen regulation protein NR(II) 0.86 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC98 0.94 JDDGAC_17730 glnL nitrogen regulation protein NR(II) 0.86 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 86
Escherichia coli ECRC102 0.94 NIAGMN_11860 glnL nitrogen regulation protein NR(II) 0.86 NIAGMN_15480 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC100 0.94 OKFHMN_14105 glnL nitrogen regulation protein NR(II) 0.86 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 80
Escherichia coli ECRC62 0.94 BNILDI_05295 glnL nitrogen regulation protein NR(II) 0.86 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia fergusonii Becca 0.93 EFB2_04747 Sensory histidine kinase/phosphatase NtrB 0.86 EFB2_00579 RNase E specificity factor CsrD low > 86
Escherichia coli ECOR27 0.93 NOLOHH_06235 glnL nitrogen regulation protein NR(II) 0.86 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 75
Escherichia coli ECOR38 0.93 HEPCGN_12735 glnL nitrogen regulation protein NR(II) 0.86 HEPCGN_16585 csrD RNase E specificity factor CsrD low > 87
Escherichia coli Nissle 1917 0.93 ECOLIN_RS22300 nitrogen regulation protein NR(II) 0.86 ECOLIN_RS18635 RNase E specificity factor CsrD low > 55
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4351 Signal transduction histidine kinase, nitrogen specific 0.80 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_04596 Sensory histidine kinase/phosphatase NtrB 0.80 MPMX20_04158 RNase E specificity factor CsrD low > 85
Erwinia tracheiphila SCR3 0.90 LU632_RS22140 glnL nitrogen regulation protein NR(II) 0.51 LU632_RS21455 csrD RNase E specificity factor CsrD low > 74
Serratia liquefaciens MT49 0.88 IAI46_24955 nitrogen regulation protein NR(II) 0.56 IAI46_22725 RNase E specificity factor CsrD low > 86
Pantoea sp. MT58 0.88 IAI47_00455 nitrogen regulation protein NR(II) 0.50 IAI47_02430 RNase E specificity factor CsrD low > 76
Rahnella sp. WP5 0.87 EX31_RS15875 nitrogen regulation protein NR(II) 0.49 EX31_RS12230 RNase E specificity factor CsrD low > 89
Dickeya dadantii 3937 0.84 DDA3937_RS00130 nitrogen regulation protein NR(II) 0.51 DDA3937_RS01425 RNase E specificity factor CsrD low > 74
Pectobacterium carotovorum WPP14 0.84 HER17_RS21435 nitrogen regulation protein NR(II) 0.52 HER17_RS20175 RNase E specificity factor CsrD low > 75
Dickeya dianthicola ME23 0.84 DZA65_RS22205 nitrogen regulation protein NR(II) 0.51 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS21230 nitrogen regulation protein NR(II) 0.51 HGI48_RS01345 RNase E specificity factor CsrD low > 71
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_13860 nitrogen regulation protein NR(II) 0.26 CSW01_02100 RNase E specificity factor CsrD low > 62
Shewanella sp. ANA-3 0.48 Shewana3_0259 signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) 0.20 Shewana3_3668 regulatory protein CsrD (RefSeq) low > 73
Shewanella oneidensis MR-1 0.47 SO4471 ntrB nitrogen regulation protein (NCBI ptt file) 0.22 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.46 Shew_3560 signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) 0.20 Shew_0384 regulatory protein CsrD (RefSeq) low > 60
Shewanella amazonensis SB2B 0.46 Sama_3426 nitrogen regulation protein (RefSeq) 0.21 Sama_0449 regulatory protein CsrD (RefSeq) low > 62
Pseudomonas sp. RS175 0.42 PFR28_04945 Sensory histidine kinase/phosphatase NtrB 0.09 PFR28_04783 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_09725 histidine kinase 0.10 AO356_10580 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_3825 Nitrogen regulation protein NtrB (EC 2.7.13.3) 0.10 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD low > 103
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_346 Nitrogen regulation protein NtrB (EC 2.7.13.3) 0.09 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD low > 87
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_1610 Nitrogen regulation protein NtrB (EC 2.7.13.3) 0.11 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD low > 87
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_12150 histidine kinase 0.10 AO353_11170 hypothetical protein low > 101

Not shown: 44 genomes with orthologs for GFF2221 only; 0 genomes with orthologs for GFF2133 only