Conservation of cofitness between PS417_23605 and PS417_10550 in Pseudomonas simiae WCS417

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_23605 permease DsdX 1.0 PS417_10550 DNA topoisomerase III 0.35 1
Pseudomonas fluorescens SBW25 0.94 PFLU_RS25420 2-keto-3-deoxygluconate permease 0.95 PFLU_RS10610 DNA topoisomerase III low > 109
Pseudomonas fluorescens SBW25-INTG 0.94 PFLU_RS25420 2-keto-3-deoxygluconate permease 0.95 PFLU_RS10610 DNA topoisomerase III low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_0417 gluconate permease GntT 0.82 Psyr_2244 DNA topoisomerase III low > 86
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_0417 gluconate permease GntT 0.82 Psyr_2244 DNA topoisomerase III low > 86
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_05900 permease DsdX 0.87 AO353_26780 DNA topoisomerase III low > 101
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_07790 permease DsdX 0.86 AO356_21700 DNA topoisomerase III low > 104
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_3441 Gluconate transporter family protein 0.87 Pf6N2E2_2100 DNA topoisomerase III (EC 5.99.1.2) low > 103
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_5135 Gluconate transporter family protein 0.84 PfGW456L13_3568 DNA topoisomerase III (EC 5.99.1.2) low > 87
Pseudomonas sp. RS175 0.82 PFR28_00028 High-affinity gluconate transporter 0.86 PFR28_01342 DNA topoisomerase 3 low > 88
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS28835 gluconate:H+ symporter (gntT) (from data) 0.36 RR42_RS24470 hypothetical protein low > 128
Pantoea sp. MT58 0.39 IAI47_14085 gluconate transporter 0.33 IAI47_08980 DNA topoisomerase III low > 76
Dickeya dadantii 3937 0.39 DDA3937_RS19775 gluconate transporter 0.32 DDA3937_RS10300 DNA topoisomerase III low > 74
Dickeya dianthicola 67-19 0.39 HGI48_RS19890 gluconate transporter 0.32 HGI48_RS10310 DNA topoisomerase III low > 71
Dickeya dianthicola ME23 0.39 DZA65_RS20960 gluconate transporter 0.46 DZA65_RS04865 DNA topoisomerase III low > 75
Serratia liquefaciens MT49 0.38 IAI46_23960 gluconate transporter 0.33 IAI46_14305 DNA topoisomerase III low > 86
Enterobacter sp. TBS_079 0.38 MPMX20_04302 High-affinity gluconate transporter 0.32 MPMX20_01853 DNA topoisomerase 3 0.17 79
Escherichia coli ECRC98 0.38 JDDGAC_20615 gntT gluconate transporter 0.33 JDDGAC_01405 topB DNA topoisomerase III low > 86
Escherichia coli BL21 0.38 ECD_03267 gluconate transporter, high-affinity GNT I system 0.33 ECD_01732 DNA topoisomerase III low > 61
Escherichia coli ECRC102 0.38 NIAGMN_14755 gntT gluconate transporter 0.33 NIAGMN_01235 topB DNA topoisomerase III — —
Escherichia coli Nissle 1917 0.38 ECOLIN_RS19505 gluconate transporter 0.33 ECOLIN_RS09830 DNA topoisomerase III — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00288 High-affinity gluconate transporter 0.33 OHPLBJKB_01969 DNA topoisomerase 3 low > 73
Escherichia coli ECRC101 0.38 MCAODC_07515 gntT gluconate transporter 0.33 MCAODC_18580 topB DNA topoisomerase III low > 87
Escherichia coli ECOR27 0.38 NOLOHH_08770 gntT gluconate transporter 0.33 NOLOHH_17340 topB DNA topoisomerase III low > 75
Escherichia coli ECRC62 0.38 BNILDI_02745 gntT gluconate transporter 0.33 BNILDI_16125 topB DNA topoisomerase III low > 75
Escherichia fergusonii Becca 0.38 EFB2_00413 High-affinity gluconate transporter 0.33 EFB2_02231 DNA topoisomerase 3 low > 86
Escherichia coli ECRC100 0.38 OKFHMN_16985 gntT gluconate transporter 0.33 OKFHMN_26830 topB DNA topoisomerase III low > 80
Escherichia coli ECOR38 0.38 HEPCGN_15795 gntT gluconate transporter 0.33 HEPCGN_05200 topB DNA topoisomerase III low > 87
Escherichia coli ECRC99 0.38 KEDOAH_11155 gntT gluconate transporter 0.33 KEDOAH_01280 topB DNA topoisomerase III — —
Escherichia coli BW25113 0.38 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) 0.33 b1763 topB DNA topoisomerase III (NCBI) low > 76
Enterobacter asburiae PDN3 0.38 EX28DRAFT_4127 gluconate transporter 0.32 EX28DRAFT_1764 DNA topoisomerase III, bacteria and conjugative plasmid low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF602 High-affinity gluconate transporter GntT 0.33 GFF3486 DNA topoisomerase III (EC 5.99.1.2) low > 78
Klebsiella michiganensis M5al 0.37 BWI76_RS26615 gluconate:H+ symporter (from data) 0.33 BWI76_RS11605 DNA topoisomerase III low > 92
Rahnella sp. WP5 0.36 EX31_RS05050 gluconate transporter 0.33 EX31_RS06315 DNA topoisomerase III low > 89
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_01470 permease 0.34 CSW01_10220 DNA topoisomerase III low > 62
Pectobacterium carotovorum WPP14 0.24 HER17_RS01460 GntP family permease 0.32 HER17_RS11095 DNA topoisomerase III low > 75
Shewanella oneidensis MR-1 0.17 SO1771 permease, GntP family (NCBI ptt file) 0.32 SO3061 topB DNA topoisomerase III (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.16 Shewana3_2684 gluconate transporter (RefSeq) 0.32 Shewana3_1486 DNA topoisomerase III (RefSeq) low > 73

Not shown: 14 genomes with orthologs for PS417_23605 only; 18 genomes with orthologs for PS417_10550 only