| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_15650 | | glutamine amidotransferase | 1.0 | PS417_08590 | | hypothetical protein | 0.19 | 16 |
| Pseudomonas fluorescens SBW25-INTG | 0.93 | PFLU_RS17630 | | type 1 glutamine amidotransferase | 0.97 | PFLU_RS08545 | | GAF domain-containing protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.93 | PFLU_RS17630 | | type 1 glutamine amidotransferase | 0.97 | PFLU_RS08545 | | GAF domain-containing protein | low | > 109 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.40 | CA264_16230 | | protease | 0.40 | CA264_17885 | | GAF domain-containing protein | low | > 74 |
| Rhizobium sp. OAE497 | 0.39 | ABIE40_RS29470 | | type 1 glutamine amidotransferase domain-containing protein | 0.58 | ABIE40_RS12595 | | GAF domain-containing protein | low | > 107 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.38 | A4249_RS03530 | | type 1 glutamine amidotransferase | 0.41 | A4249_RS01025 | | GAF domain-containing protein | low | > 48 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.37 | Psyr_4763 | | Peptidase C56, PfpI | 0.82 | Psyr_3610 | | GAF | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.37 | Psyr_4763 | | Peptidase C56, PfpI | 0.82 | Psyr_3610 | | GAF | low | > 86 |
| Pseudomonas putida KT2440 | 0.37 | PP_2725 | | Protease PfpI | 0.85 | PP_1877 | | free methionine-(R)-sulfoxide reductase | low | > 96 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.1703.1 | | ThiJ/PfpI family protein | 0.53 | Xcc-8004.4532.1 | | Free methionine-(R)-sulfoxide reductase, contains GAF domain | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.37 | Pf6N2E2_4567 | | ThiJ/PfpI family protein | 0.89 | Pf6N2E2_2440 | | Free methionine-(R)-sulfoxide reductase, contains GAF domain | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.36 | BPHYT_RS27040 | | permease | 0.61 | BPHYT_RS06285 | | diguanylate cyclase | — | — |
| Pseudomonas sp. S08-1 | 0.35 | OH686_14115 | | Intracellular protease | 0.85 | OH686_22605 | | Free methionine-(R)-sulfoxide reductase, contains GAF domain | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_005874 | | protease I | 0.59 | ABIE53_001450 | | L-methionine (R)-S-oxide reductase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.34 | H281DRAFT_02915 | | protease I | 0.57 | H281DRAFT_00323 | | GAF domain-containing protein | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.34 | CA265_RS23775 | | protease | 0.41 | CA265_RS09280 | | diguanylate cyclase | low | > 88 |
| Phaeobacter inhibens DSM 17395 | 0.34 | PGA1_c29110 | | intracellular protease PfpI | 0.34 | PGA1_c33170 | | putative sensor protein | low | > 62 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.34 | Echvi_3537 | | intracellular protease, PfpI family | 0.41 | Echvi_0965 | | GAF domain-containing protein | low | > 79 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS10790 | | type 1 glutamine amidotransferase domain-containing protein | 0.53 | QEN71_RS15555 | | GAF domain-containing protein | low | > 153 |
| Alteromonas macleodii MIT1002 | 0.33 | MIT1002_02940 | | General stress protein 18 | 0.58 | MIT1002_02022 | | Free methionine-R-sulfoxide reductase | low | > 70 |
| Pseudomonas sp. RS175 | 0.32 | PFR28_01948 | | Putative cysteine protease YraA | 0.80 | PFR28_00990 | | Free methionine-R-sulfoxide reductase | low | > 88 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_3202 | | intracellular protease, PfpI family | 0.55 | EX28DRAFT_0724 | | GAF domain-containing protein | — | — |
| Enterobacter sp. TBS_079 | 0.30 | MPMX20_04057 | | Protein/nucleic acid deglycase 2 | 0.56 | MPMX20_02739 | | Free methionine-R-sulfoxide reductase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.30 | GFF1515 | | General stress protein 18 | 0.52 | GFF2847 | | Free methionine-(R)-sulfoxide reductase, contains GAF domain | — | — |
| Escherichia coli BW25113 | 0.30 | b3153 | yhbO | orf, hypothetical protein (VIMSS) | 0.53 | b1832 | yebR | free methionine-(R)-sulfoxide reductase (RefSeq) | low | > 76 |
| Klebsiella michiganensis M5al | 0.28 | BWI76_RS24945 | | glutamine amidotransferase | 0.52 | BWI76_RS17985 | | hypothetical protein | low | > 92 |
| Pantoea sp. MT58 | 0.28 | IAI47_16940 | | type 1 glutamine amidotransferase | 0.51 | IAI47_08695 | | GAF domain-containing protein | low | > 76 |
| Shewanella oneidensis MR-1 | 0.19 | SO1378 | | ThiJ/PfpI family protein (NCBI ptt file) | 0.53 | SO2603 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Phocaeicola vulgatus CL09T03C04 | 0.16 | HMPREF1058_RS08305 | | DJ-1/PfpI family protein | 0.38 | HMPREF1058_RS05760 | | GAF domain-containing protein | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.16 | ABI39_RS02480 | | DJ-1/PfpI family protein | 0.38 | ABI39_RS18350 | | GAF domain-containing protein | low | > 72 |
Not shown: 28 genomes with orthologs for PS417_15650 only; 27 genomes with orthologs for PS417_08590 only