Conservation of cofitness between Psest_2565 and Psest_1634 in Pseudomonas stutzeri RCH2

23 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_2565 Transcriptional regulator 1.0 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.21 12
Dickeya dadantii 3937 0.35 DDA3937_RS14890 LysR family transcriptional regulator 0.29 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 74
Ralstonia solanacearum PSI07 0.32 RPSI07_RS02410 LysR family transcriptional regulator 0.28 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 81
Enterobacter sp. TBS_079 0.32 MPMX20_02550 HTH-type transcriptional regulator YhaJ 0.30 MPMX20_03259 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 85
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS12670 LysR family transcriptional regulator 0.16 HSERO_RS23825 hypothetical protein low > 78
Pseudomonas sp. RS175 0.29 PFR28_01506 putative HTH-type transcriptional regulator YahB 0.63 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 88
Caulobacter crescentus NA1000 0.29 CCNA_00832 LysR-family transcriptional regulator 0.18 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC low > 66
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_00832 LysR-family transcriptional regulator 0.18 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC low > 67
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS22310 LysR family transcriptional regulator 0.22 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 128
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_3137 Transcriptional regulator, LysR family 0.64 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 87
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_28560 LysR family transcriptional regulator 0.65 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 101
Shewanella oneidensis MR-1 0.24 SO1907 transcriptional regulator, LysR family (NCBI ptt file) 0.15 SO3073 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.24 Shewana3_1683 LysR family transcriptional regulator (RefSeq) 0.15 Shewana3_1474 FAD dependent oxidoreductase (RefSeq) low > 73
Paraburkholderia bryophila 376MFSha3.1 0.23 H281DRAFT_02509 DNA-binding transcriptional regulator, LysR family 0.30 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein low > 103
Burkholderia phytofirmans PsJN 0.22 BPHYT_RS29085 LysR family transcriptional regulator 0.31 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 109
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_3647 LysR family transcriptional regulator PA4989 0.63 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 103
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_08825 LysR family transcriptional regulator 0.64 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 104
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_1450 LysR family transcriptional regulator PA4989 0.62 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 87
Pseudomonas putida KT2440 0.19 PP_4929 Transcriptional regulator, LysR family 0.61 PP_1751 methyltransferase/FAD-dependent oxidoreductase low > 96
Dickeya dianthicola 67-19 0.18 HGI48_RS04505 LysR family transcriptional regulator 0.30 HGI48_RS14485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 71
Pseudomonas simiae WCS417 0.18 PS417_02340 LysR family transcriptional regulator 0.63 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 88
Dickeya dianthicola ME23 0.18 DZA65_RS04425 LysR family transcriptional regulator 0.30 DZA65_RS15420 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF4420 DNA-binding transcriptional activator of the allD operon 0.33 GFF1945 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 78
Acidovorax sp. GW101-3H11 0.14 Ac3H11_3277 LysR family transcriptional regulator PA2758 0.17 Ac3H11_579 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 79

Not shown: 10 genomes with orthologs for Psest_2565 only; 40 genomes with orthologs for Psest_1634 only