Conservation of cofitness between EX31_RS03160 and EX31_RS09630 in Rahnella sp. WP5

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS03160 MFS transporter 1.0 EX31_RS09630 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.34 20
Pectobacterium carotovorum WPP14 0.86 HER17_RS04075 MFS transporter 0.88 HER17_RS12500 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 75
Escherichia coli ECOR38 0.85 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.85 HEPCGN_02070 potF spermidine/putrescine ABC transporter substrate-binding protein PotF low > 87
Escherichia coli ECRC62 0.85 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.85 BNILDI_20585 potF spermidine/putrescine ABC transporter substrate-binding protein PotF low > 75
Escherichia fergusonii Becca 0.85 EFB2_01128 putative glucarate transporter 0.85 EFB2_03207 Putrescine-binding periplasmic protein low > 86
Escherichia coli BL21 0.85 ECD_02634 putative D-glucarate transporter 0.85 ECD_00859 putrescine ABC transporter periplasmic binding protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_00942 putative glucarate transporter 0.85 OHPLBJKB_02814 Putrescine-binding periplasmic protein low > 73
Escherichia coli ECOR27 0.85 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.85 NOLOHH_22330 potF spermidine/putrescine ABC transporter substrate-binding protein PotF low > 75
Escherichia coli Nissle 1917 0.85 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.85 ECOLIN_RS04550 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 55
Escherichia coli BW25113 0.85 b2789 gudP predicted D-glucarate transporter (NCBI) 0.85 b0854 potF putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) low > 76
Escherichia coli ECRC100 0.85 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.84 OKFHMN_05960 potF spermidine/putrescine ABC transporter substrate-binding protein PotF low > 80
Escherichia coli ECRC98 0.85 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.84 JDDGAC_09595 potF spermidine/putrescine ABC transporter substrate-binding protein PotF low > 86
Escherichia coli ECRC99 0.85 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.84 KEDOAH_21950 potF spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia coli ECRC102 0.85 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.84 NIAGMN_04005 potF spermidine/putrescine ABC transporter substrate-binding protein PotF — —
Escherichia coli ECRC101 0.85 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.84 MCAODC_25175 potF spermidine/putrescine ABC transporter substrate-binding protein PotF low > 87
Klebsiella michiganensis M5al 0.84 BWI76_RS22835 MFS transporter 0.85 BWI76_RS09460 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF4843 D-glucarate permease 0.84 GFF758 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) low > 78
Enterobacter asburiae PDN3 0.82 EX28DRAFT_2870 D-galactonate transporter 0.84 EX28DRAFT_2099 Spermidine/putrescine-binding periplasmic protein low > 76
Enterobacter sp. TBS_079 0.82 MPMX20_03659 putative glucarate transporter 0.85 MPMX20_01495 Putrescine-binding periplasmic protein low > 85
Dickeya dadantii 3937 0.81 DDA3937_RS17055 MFS transporter 0.87 DDA3937_RS09460 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 74
Dickeya dianthicola ME23 0.81 DZA65_RS18185 MFS transporter 0.86 DZA65_RS09790 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 75
Dickeya dianthicola 67-19 0.81 HGI48_RS17110 MFS transporter 0.86 HGI48_RS09480 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 71
Pantoea sp. MT58 0.79 IAI47_04080 MFS transporter 0.77 IAI47_13045 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 76
Pseudomonas putida KT2440 0.67 PP_3600 glucarate transporter 0.57 PP_5180 spermidine/putrescine ABC transporter - periplasmic subunit low > 96
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS04245 MFS transporter 0.57 PFLU_RS28775 polyamine ABC transporter substrate-binding protein low > 109
Pseudomonas fluorescens SBW25 0.66 PFLU_RS04245 MFS transporter 0.57 PFLU_RS28775 polyamine ABC transporter substrate-binding protein low > 109
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_4226 D-galactonate transporter 0.58 Psyr_4865 extracellular solute-binding protein, family 1 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_4226 D-galactonate transporter 0.58 Psyr_4865 extracellular solute-binding protein, family 1 low > 86
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_07175 glucarate transporter 0.57 AO356_13155 spermidine/putrescine ABC transporter substrate-binding protein low > 104
Pseudomonas simiae WCS417 0.66 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.57 PS417_27125 spermidine/putrescine ABC transporter substrate-binding protein low > 88
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_5043 D-galactarate permease 0.58 PfGW456L13_929 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) low > 87
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_3297 D-galactarate permease 0.58 Pf6N2E2_4513 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) low > 103
Pseudomonas sp. RS175 0.65 PFR28_00144 putative glucarate transporter 0.57 PFR28_04295 Putrescine-binding periplasmic protein SpuD low > 88
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_05295 glucarate transporter 0.58 AO353_08580 spermidine/putrescine ABC transporter substrate-binding protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_1108 D-galactarate permease 0.58 Pf1N1B4_2260 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) low > 87
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS31870 MFS transporter 0.51 QEN71_RS07120 polyamine ABC transporter substrate-binding protein low > 153
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.1209.1 D-galactarate permease 0.55 Xcc-8004.2206.1 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) low > 74
Azospirillum sp. SherDot2 0.64 MPMX19_02893 putative glucarate transporter 0.40 MPMX19_04883 Spermidine-binding periplasmic protein SpuE low > 112
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_05318 MFS transporter, ACS family, glucarate transporter 0.51 H281DRAFT_05180 putrescine transport system substrate-binding protein low > 103
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS24150 glucarate transporter 0.52 BPHYT_RS11450 ABC transporter substrate-binding protein low > 109
Serratia liquefaciens MT49 0.35 IAI46_16925 MFS transporter 0.84 IAI46_08370 spermidine/putrescine ABC transporter substrate-binding protein PotF low > 86

Not shown: 11 genomes with orthologs for EX31_RS03160 only; 27 genomes with orthologs for EX31_RS09630 only