Conservation of cofitness between EX28DRAFT_3732 and EX28DRAFT_3277 in Enterobacter asburiae PDN3

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Enterobacter asburiae PDN3 1.0 EX28DRAFT_3732 poly(A) polymerase 1.0 EX28DRAFT_3277 Stringent starvation protein B 0.73 1
Enterobacter sp. TBS_079 0.89 MPMX20_00829 Poly(A) polymerase I 0.81 MPMX20_04132 Stringent starvation protein B low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.73 GFF2967 ClpXP protease specificity-enhancing factor / Stringent starvation protein B low > 78
Escherichia fergusonii Becca 0.85 EFB2_03901 Poly(A) polymerase I 0.78 EFB2_00602 Stringent starvation protein B low > 86
Escherichia coli BL21 0.85 ECD_00142 poly(A) polymerase 0.71 ECD_03088 ClpXP protease specificity enhancing factor low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_03519 Poly(A) polymerase I 0.71 OHPLBJKB_00476 Stringent starvation protein B low > 73
Escherichia coli ECOR38 0.85 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.71 HEPCGN_16710 sspB ClpXP protease specificity-enhancing factor low > 87
Escherichia coli BW25113 0.85 b0143 pcnB poly(A) polymerase I (VIMSS) 0.71 b3228 sspB ClpXP protease specificity-enhancing factor (NCBI) low > 76
Escherichia coli ECRC102 0.85 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.71 NIAGMN_15595 sspB ClpXP protease specificity-enhancing factor — —
Escherichia coli Nissle 1917 0.85 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.78 ECOLIN_RS18515 ClpXP protease specificity-enhancing factor — —
Escherichia coli ECRC99 0.85 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.71 KEDOAH_10315 sspB ClpXP protease specificity-enhancing factor — —
Escherichia coli ECRC100 0.85 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.71 OKFHMN_17835 sspB ClpXP protease specificity-enhancing factor low > 80
Escherichia coli ECRC98 0.85 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.71 JDDGAC_21460 sspB ClpXP protease specificity-enhancing factor low > 86
Escherichia coli ECRC101 0.85 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.71 MCAODC_08355 sspB ClpXP protease specificity-enhancing factor low > 87
Escherichia coli ECOR27 0.85 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.71 NOLOHH_09635 sspB ClpXP protease specificity-enhancing factor low > 75
Escherichia coli ECRC62 0.85 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.71 BNILDI_01900 sspB ClpXP protease specificity-enhancing factor low > 75
Klebsiella michiganensis M5al 0.82 BWI76_RS05005 polynucleotide adenylyltransferase 0.75 BWI76_RS25330 stringent starvation protein B — —
Erwinia tracheiphila SCR3 0.78 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.71 LU632_RS21325 sspB ClpXP protease specificity-enhancing factor low > 74
Dickeya dadantii 3937 0.77 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.63 DDA3937_RS01650 ClpXP protease specificity-enhancing factor low > 74
Dickeya dianthicola 67-19 0.76 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.63 HGI48_RS01550 ClpXP protease specificity-enhancing factor low > 71
Pantoea sp. MT58 0.76 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.69 IAI47_17230 ClpXP protease specificity-enhancing factor low > 76
Dickeya dianthicola ME23 0.76 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.62 DZA65_RS01620 ClpXP protease specificity-enhancing factor low > 75
Serratia liquefaciens MT49 0.76 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.69 IAI46_22360 ClpXP protease specificity-enhancing factor low > 86
Pectobacterium carotovorum WPP14 0.75 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.67 HER17_RS19930 ClpXP protease specificity-enhancing factor low > 75
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.57 CSW01_03065 ClpXP protease specificity-enhancing factor low > 62
Shewanella oneidensis MR-1 0.54 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.50 SO0612 sspB stringent starvation protein b (NCBI ptt file) — —
Shewanella sp. ANA-3 0.54 Shewana3_3406 poly(A) polymerase (RefSeq) 0.50 Shewana3_0605 ClpXP protease specificity-enhancing factor (RefSeq) low > 73
Shewanella loihica PV-4 0.52 Shew_3131 poly(A) polymerase (RefSeq) 0.47 Shew_0574 ClpXP protease specificity-enhancing factor (RefSeq) — —
Alteromonas macleodii MIT1002 0.52 MIT1002_03692 Poly(A) polymerase I precursor 0.44 MIT1002_00818 Stringent starvation protein B low > 70
Shewanella amazonensis SB2B 0.51 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.50 Sama_3017 ClpXP protease specificity-enhancing factor (RefSeq) low > 62
Marinobacter adhaerens HP15 0.46 HP15_326 polyA polymerase 0.40 HP15_549 stringent starvation protein B low > 73
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.35 ABZR86_RS09860 ClpXP protease specificity-enhancing factor low > 74
Lysobacter sp. OAE881 0.44 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.42 ABIE51_RS15420 ClpXP protease specificity-enhancing factor low > 62
Pseudomonas sp. S08-1 0.43 OH686_17255 Poly(A) polymerase 0.41 OH686_08370 Stringent starvation protein B low > 80
Pseudomonas stutzeri RCH2 0.41 Psest_0998 poly(A) polymerase 0.41 Psest_3275 Stringent starvation protein B low > 67
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB 0.32 ABZR87_RS02365 ClpXP protease specificity-enhancing factor 0.55 70
Variovorax sp. SCN45 0.33 GFF3943 Poly(A) polymerase (EC 2.7.7.19) 0.35 GFF6698 ClpXP protease specificity-enhancing factor SspB low > 127

Not shown: 22 genomes with orthologs for EX28DRAFT_3732 only; 10 genomes with orthologs for EX28DRAFT_3277 only