Conservation of cofitness between ECD_00433 and ECD_04047 in Escherichia coli BL21

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00433 TraB family protein 1.0 ECD_04047 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent 0.33 38
Escherichia coli BW25113 1.00 b0482 ybaP hypothetical protein (NCBI) 1.00 b4180 rlmB 23S rRNA (Gm2251)-methyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.99 NOLOHH_01025 ybaP Uncharacterized protein YbaP 1.00 NOLOHH_04480 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 75
Escherichia coli ECRC100 0.99 OKFHMN_08095 ybaP Uncharacterized protein YbaP 1.00 OKFHMN_12215 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 80
Escherichia fergusonii Becca 0.99 EFB2_03576 hypothetical protein 1.00 EFB2_04355 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03192 hypothetical protein 1.00 OHPLBJKB_03862 '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 low > 73
Escherichia coli ECOR38 0.99 HEPCGN_06715 ybaP Uncharacterized protein YbaP 1.00 HEPCGN_10445 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 87
Escherichia coli ECRC99 0.99 KEDOAH_19875 ybaP Uncharacterized protein YbaP 1.00 KEDOAH_15940 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli ECRC98 0.99 JDDGAC_11740 ybaP Uncharacterized protein YbaP 1.00 JDDGAC_15855 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 86
Escherichia coli ECRC101 0.99 MCAODC_27315 ybaP Uncharacterized protein YbaP 1.00 MCAODC_02730 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 87
Escherichia coli ECRC102 0.99 NIAGMN_06145 ybaP Uncharacterized protein YbaP 1.00 NIAGMN_10065 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Escherichia coli ECRC62 0.99 BNILDI_22445 ybaP Uncharacterized protein YbaP 1.00 BNILDI_07010 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS02855 TraB/GumN family protein 1.00 ECOLIN_RS24270 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Klebsiella michiganensis M5al 0.71 BWI76_RS06875 conjugal transfer protein TraB 0.96 BWI76_RS02580 23S rRNA (guanosine(2251)-2'-O)-methyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF4402 FIG00921183: possible ligase 0.97 GFF833 '23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)' transl_table=11 low > 78
Enterobacter sp. TBS_079 0.65 MPMX20_01083 hypothetical protein 0.96 MPMX20_00461 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 85
Enterobacter asburiae PDN3 0.64 EX28DRAFT_2475 Uncharacterized protein conserved in bacteria 0.97 EX28DRAFT_3377 rRNA methylase, putative, group 3 low > 76
Serratia liquefaciens MT49 0.61 IAI46_05305 TraB/GumN family protein 0.87 IAI46_01665 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 86
Rahnella sp. WP5 0.56 EX31_RS22570 conjugal transfer protein TraB 0.85 EX31_RS08780 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 89
Erwinia tracheiphila SCR3 0.55 LU632_RS15305 TraB/GumN family protein 0.85 LU632_RS21745 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 74
Pantoea sp. MT58 0.52 IAI47_14405 TraB/GumN family protein 0.87 IAI47_02630 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 76
Dickeya dianthicola ME23 0.49 DZA65_RS06220 hypothetical protein 0.86 DZA65_RS18400 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 75
Dickeya dadantii 3937 0.49 DDA3937_RS05840 TraB/GumN family protein 0.87 DDA3937_RS17255 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 74
Dickeya dianthicola 67-19 0.49 HGI48_RS05885 TraB/GumN family protein 0.87 HGI48_RS17310 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS15630 TraB/GumN family protein 0.84 HER17_RS03840 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 75
Vibrio cholerae E7946 ATCC 55056 0.22 CSW01_11315 TraB/GumN family protein 0.73 CSW01_13150 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 62
Rhodanobacter denitrificans FW104-10B01 0.13 LRK54_RS14385 TraB/GumN family protein 0.45 LRK54_RS00490 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 59
Rhodanobacter sp. FW510-T8 0.12 OKGIIK_03225 Polysaccharide biosynthesis protein GumN 0.43 OKGIIK_06760 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 52
Caulobacter crescentus NA1000 0.12 CCNA_02312 TraB superfamily protein 0.26 CCNA_01297 23S rRNA Gm2251 methyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.12 CCNA_02312 TraB superfamily protein 0.26 CCNA_01297 23S rRNA Gm2251 methyltransferase low > 67
Dyella japonica UNC79MFTsu3.2 0.11 ABZR86_RS21395 TraB/GumN family protein 0.46 ABZR86_RS08265 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB low > 74
Alteromonas macleodii MIT1002 0.11 MIT1002_03727 TraB family protein 0.65 MIT1002_03605 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB low > 70
Sphingomonas koreensis DSMZ 15582 0.11 Ga0059261_3233 Uncharacterized protein conserved in bacteria 0.25 Ga0059261_1814 rRNA methylase, putative, group 3 low > 68
Shewanella oneidensis MR-1 0.11 SO0557 conserved hypothetical protein (NCBI ptt file) 0.67 SO3934 RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.10 Shewana3_0556 GumN family protein (RefSeq) 0.66 Shewana3_0698 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.10 Shew_0438 GumN family protein (RefSeq) 0.63 Shew_3288 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) low > 60
Burkholderia phytofirmans PsJN 0.10 BPHYT_RS14295 GumN family protein 0.52 BPHYT_RS08460 23S rRNA (guanosine-2'-O-)-methyltransferase — —

Not shown: 0 genomes with orthologs for ECD_00433 only; 55 genomes with orthologs for ECD_04047 only