Conservation of cofitness between ECD_03421 and ECD_03267 in Escherichia coli BL21

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03421 xylose divergent operon transcriptional activator 1.0 ECD_03267 gluconate transporter, high-affinity GNT I system 0.43 29
Escherichia coli ECRC100 1.00 OKFHMN_15935 xylR DNA-binding transcriptional regulator XylR 1.00 OKFHMN_16985 gntT gluconate transporter low > 80
Escherichia coli ECRC62 1.00 BNILDI_03665 xylR DNA-binding transcriptional regulator XylR 1.00 BNILDI_02745 gntT gluconate transporter low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00135 Xylose operon regulatory protein 1.00 OHPLBJKB_00288 High-affinity gluconate transporter low > 73
Escherichia coli ECOR27 1.00 NOLOHH_07880 xylR DNA-binding transcriptional regulator XylR 1.00 NOLOHH_08770 gntT gluconate transporter low > 75
Escherichia coli BW25113 1.00 b3569 xylR DNA-binding transcriptional activator, xylose-binding (NCBI) 1.00 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) low > 76
Escherichia coli ECRC99 1.00 KEDOAH_12215 xylR DNA-binding transcriptional regulator XylR 1.00 KEDOAH_11155 gntT gluconate transporter — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20410 D-xylose utilization transcriptional activator XylR 1.00 ECOLIN_RS19505 gluconate transporter low > 55
Escherichia coli ECRC98 1.00 JDDGAC_19565 xylR DNA-binding transcriptional regulator XylR 1.00 JDDGAC_20615 gntT gluconate transporter low > 86
Escherichia coli ECOR38 1.00 HEPCGN_14820 xylR DNA-binding transcriptional regulator XylR 1.00 HEPCGN_15795 gntT gluconate transporter low > 87
Escherichia coli ECRC102 1.00 NIAGMN_13695 xylR DNA-binding transcriptional regulator XylR 1.00 NIAGMN_14755 gntT gluconate transporter — —
Escherichia coli ECRC101 1.00 MCAODC_06450 xylR DNA-binding transcriptional regulator XylR 1.00 MCAODC_07515 gntT gluconate transporter low > 87
Escherichia fergusonii Becca 1.00 EFB2_00238 Xylose operon regulatory protein 1.00 EFB2_00413 High-affinity gluconate transporter low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF442 Xylose activator XylR (AraC family) 0.96 GFF602 High-affinity gluconate transporter GntT low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3834 Transcriptional regulators 0.96 EX28DRAFT_4127 gluconate transporter low > 76
Enterobacter sp. TBS_079 0.91 MPMX20_00161 Xylose operon regulatory protein 0.96 MPMX20_04302 High-affinity gluconate transporter low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS27045 XylR family transcriptional regulator 0.92 BWI76_RS26615 gluconate:H+ symporter (from data) low > 92
Pantoea sp. MT58 0.84 IAI47_00175 XylR family transcriptional regulator 0.89 IAI47_14085 gluconate transporter low > 76
Rahnella sp. WP5 0.84 EX31_RS09745 XylR family transcriptional regulator 0.81 EX31_RS05050 gluconate transporter low > 89
Serratia liquefaciens MT49 0.82 IAI46_00300 DNA-binding transcriptional regulator 0.86 IAI46_23960 gluconate transporter low > 86
Dickeya dianthicola 67-19 0.81 HGI48_RS00330 XylR family transcriptional regulator 0.85 HGI48_RS19890 gluconate transporter low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS00330 DNA-binding transcriptional regulator 0.85 DZA65_RS20960 gluconate transporter low > 75
Dickeya dadantii 3937 0.81 DDA3937_RS20915 DNA-binding transcriptional regulator 0.85 DDA3937_RS19775 gluconate transporter 0.28 67
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS14435 DNA-binding transcriptional regulator 0.38 ABZR86_RS12640 gluconate:H+ symporter 0.31 29
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS25880 DNA-binding transcriptional regulator 0.42 QEN71_RS26910 GntP family permease low > 153
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_03875 transcriptional regulator, AraC family 0.42 H281DRAFT_04276 gluconate permease GntT low > 103
Paraburkholderia graminis OAS925 0.46 ABIE53_004928 LacI family transcriptional regulator 0.42 ABIE53_003515 GntP family gluconate:H+ symporter low > 113
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_2882 transcriptional regulator, AraC family 0.43 Psyr_3338 gluconate permease GntT low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_2882 transcriptional regulator, AraC family 0.43 Psyr_3338 gluconate permease GntT low > 86
Pseudomonas simiae WCS417 0.45 PS417_10950 AraC family transcriptional regulator 0.41 PS417_23605 permease DsdX low > 88
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_28495 AraC family transcriptional regulator 0.41 AO356_07790 permease DsdX low > 104
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS22455 AraC family transcriptional regulator 0.43 HSERO_RS05470 permease low > 78
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS18215 DNA-binding transcriptional regulator 0.42 ABZR87_RS19095 gluconate:H+ symporter low > 80
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_1453 Xylose activator XylR (AraC family) 0.41 Pf6N2E2_3441 Gluconate transporter family protein low > 103
Pseudomonas sp. RS175 0.44 PFR28_02347 Xylose operon regulatory protein 0.41 PFR28_00028 High-affinity gluconate transporter low > 88
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS11310 DNA-binding transcriptional regulator 0.41 PFLU_RS25420 2-keto-3-deoxygluconate permease low > 109
Pseudomonas fluorescens SBW25 0.43 PFLU_RS11310 DNA-binding transcriptional regulator 0.41 PFLU_RS25420 2-keto-3-deoxygluconate permease low > 109
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_3418 Transcriptional regulators 0.48 Echvi_2089 gluconate transporter low > 79

Not shown: 4 genomes with orthologs for ECD_03421 only; 11 genomes with orthologs for ECD_03267 only