Conservation of cofitness between ECD_02883 and ECD_02888 in Escherichia coli BL21

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02883 transcriptional activator of yqhD 1.0 ECD_02888 Radical SAM superfamily protein 0.73 2
Escherichia coli ECOR38 1.00 HEPCGN_17815 yqhC DNA-binding transcriptional regulator YqhC 1.00 HEPCGN_17785 ygiQ YgiQ family radical SAM protein 0.60 3
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00691 HTH-type transcriptional activator RhaS 1.00 OHPLBJKB_00686 hypothetical protein low > 73
Escherichia coli ECRC62 1.00 BNILDI_00790 yqhC DNA-binding transcriptional regulator YqhC 1.00 BNILDI_00820 ygiQ YgiQ family radical SAM protein low > 75
Escherichia coli ECRC100 1.00 OKFHMN_18950 yqhC DNA-binding transcriptional regulator YqhC 0.99 OKFHMN_18915 ygiQ YgiQ family radical SAM protein low > 80
Escherichia coli ECRC101 1.00 MCAODC_09465 yqhC DNA-binding transcriptional regulator YqhC 0.99 MCAODC_09430 ygiQ YgiQ family radical SAM protein low > 87
Escherichia coli ECRC99 1.00 KEDOAH_09195 yqhC DNA-binding transcriptional regulator YqhC 0.99 KEDOAH_09230 ygiQ YgiQ family radical SAM protein — —
Escherichia coli ECRC98 1.00 JDDGAC_22585 yqhC DNA-binding transcriptional regulator YqhC 0.99 JDDGAC_22550 ygiQ YgiQ family radical SAM protein low > 86
Escherichia coli ECRC102 1.00 NIAGMN_16715 yqhC DNA-binding transcriptional regulator YqhC 0.99 NIAGMN_16680 ygiQ YgiQ family radical SAM protein — —
Escherichia coli BW25113 1.00 b3010 yqhC putative ARAC-type regulatory protein (VIMSS) 1.00 b4469 ygiQ hypothetical protein (NCBI) low > 76
Escherichia fergusonii Becca 0.99 EFB2_00800 HTH-type transcriptional activator RhaS 1.00 EFB2_00795 hypothetical protein low > 86
Escherichia coli ECOR27 0.99 NOLOHH_10725 yqhC DNA-binding transcriptional regulator YqhC 1.00 NOLOHH_10695 ygiQ YgiQ family radical SAM protein low > 75
Escherichia coli Nissle 1917 0.93 ECOLIN_RS17325 DNA-binding transcriptional regulator YqhC 0.99 ECOLIN_RS17355 YgiQ family radical SAM protein low > 55
Klebsiella michiganensis M5al 0.83 BWI76_RS24295 AraC family transcriptional regulator 0.93 BWI76_RS24310 YgiQ family radical SAM protein low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF3122 Transcriptional regulator, AraC family 0.93 GFF3129 Probable Fe-S oxidoreductase family 2 low > 78
Enterobacter asburiae PDN3 0.77 EX28DRAFT_3048 AraC-type DNA-binding domain-containing proteins 0.92 EX28DRAFT_3051 uncharacterized radical SAM protein YgiQ low > 76
Enterobacter sp. TBS_079 0.75 MPMX20_03854 HTH-type transcriptional activator RhaS 0.92 MPMX20_03857 hypothetical protein low > 85
Rahnella sp. WP5 0.56 EX31_RS08035 AraC family transcriptional regulator 0.80 EX31_RS04200 YgiQ family radical SAM protein low > 89
Serratia liquefaciens MT49 0.55 IAI46_21745 AraC family transcriptional regulator 0.82 IAI46_21835 YgiQ family radical SAM protein low > 86
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07615 AraC family transcriptional regulator 0.64 AO356_08575 YgiQ family radical SAM protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_3409 Hypothetical transcriptional regulator YqhC 0.64 Pf6N2E2_3600 Fe-S OXIDOREDUCTASE (1.8.-.-) low > 103
Pseudomonas sp. RS175 0.37 PFR28_00040 HTH-type transcriptional activator RhaS 0.64 PFR28_05137 hypothetical protein low > 88
Pseudomonas putida KT2440 0.34 PP_2425 putative transcriptional regulator, AraC family 0.64 PP_4872 putative enzyme of unknown function low > 96
Pseudomonas simiae WCS417 0.34 PS417_13365 AraC family transcriptional regulator 0.64 PS417_02590 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_01245 AraC family transcriptional regulator 0.64 AO353_13235 YgiQ family radical SAM protein low > 101
Shewanella loihica PV-4 0.32 Shew_0071 AraC family transcriptional regulator (RefSeq) 0.70 Shew_0233 hypothetical protein (RefSeq) low > 60
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS22930 AraC family transcriptional regulator 0.64 PFLU_RS02660 YgiQ family radical SAM protein low > 109
Pseudomonas fluorescens SBW25 0.32 PFLU_RS22930 AraC family transcriptional regulator 0.64 PFLU_RS02660 YgiQ family radical SAM protein low > 109
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2133 Transcriptional regulator, AraC family 0.64 PfGW456L13_137 Fe-S OXIDOREDUCTASE (1.8.-.-) low > 87
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_1993 transcriptional regulator, AraC family 0.63 Psyr_0587 Radical SAM low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_1993 transcriptional regulator, AraC family 0.63 Psyr_0587 Radical SAM low > 86
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_394 Transcriptional regulator, AraC family 0.63 Pf1N1B4_1396 Fe-S OXIDOREDUCTASE (1.8.-.-) low > 87
Pseudomonas sp. S08-1 0.24 OH686_18355 Transcriptional regulator, AraC family 0.66 OH686_15955 UPF0313 [4Fe-4S] protein YgiQ 0.48 17
Pseudomonas stutzeri RCH2 0.23 Psest_1393 AraC-type DNA-binding domain-containing proteins 0.65 Psest_0701 uncharacterized radical SAM protein YgiQ low > 67
Variovorax sp. OAS795 0.22 ABID97_RS28720 AraC family transcriptional regulator 0.61 ABID97_RS14400 YgiQ family radical SAM protein low > 91
Shewanella sp. ANA-3 0.22 Shewana3_1698 AraC family transcriptional regulator (RefSeq) 0.68 Shewana3_3874 hypothetical protein (RefSeq) low > 73
Variovorax sp. SCN45 0.22 GFF141 Transcriptional regulator, AraC family 0.61 GFF1034 UPF0313 [4Fe-4S] protein YgiQ low > 127
Shewanella amazonensis SB2B 0.22 Sama_2712 AraC family transcriptional regulator (RefSeq) 0.70 Sama_3349 hypothetical protein (RefSeq) low > 62

Not shown: 18 genomes with orthologs for ECD_02883 only; 16 genomes with orthologs for ECD_02888 only