Conservation of cofitness between ECD_02518 and ECD_02768 in Escherichia coli BL21

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent 1.0 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding 0.56 30
Escherichia coli ECRC101 0.99 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 MCAODC_09825 speA biosynthetic arginine decarboxylase low > 87
Escherichia coli ECRC99 0.99 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC102 0.99 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC98 0.99 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 JDDGAC_22935 speA biosynthetic arginine decarboxylase low > 86
Escherichia coli ECRC100 0.99 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 OKFHMN_19305 speA biosynthetic arginine decarboxylase low > 80
Escherichia coli BW25113 0.99 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) 1.00 b2938 speA arginine decarboxylase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT 1.00 OHPLBJKB_00778 Biosynthetic arginine decarboxylase 0.53 47
Escherichia coli ECOR27 0.99 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase 1.00 ECOLIN_RS16350 biosynthetic arginine decarboxylase low > 55
Escherichia fergusonii Becca 0.99 EFB2_01268 4-aminobutyrate aminotransferase GabT 1.00 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Escherichia coli ECRC62 0.99 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 BNILDI_09755 speA biosynthetic arginine decarboxylase low > 75
Escherichia coli ECOR38 0.98 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 HEPCGN_18610 speA biosynthetic arginine decarboxylase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.90 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.94 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 78
Pseudomonas sp. S08-1 0.77 OH686_11880 4-aminobutyrate transaminase 0.40 OH686_07545 arginine decarboxylase low > 80
Pseudomonas stutzeri RCH2 0.76 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type 0.40 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 67
Pseudomonas sp. RS175 0.74 PFR28_04756 5-aminovalerate aminotransferase DavT 0.40 PFR28_05228 Biosynthetic arginine decarboxylase low > 88
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.39 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_10715 4-aminobutyrate aminotransferase 0.39 AO356_08155 arginine decarboxylase low > 104
Pseudomonas fluorescens SBW25 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.39 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas putida KT2440 0.73 PP_0214 4-aminobutyrate aminotransferase 0.40 PP_0567 Biosynthetic arginine decarboxylase low > 96
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.40 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.30 33
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.39 AO353_13720 arginine decarboxylase low > 101
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.39 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 87
Pseudomonas simiae WCS417 0.73 PS417_00900 4-aminobutyrate aminotransferase 0.39 PS417_03005 arginine decarboxylase low > 88
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.39 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 87
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.40 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.40 Psyr_4381 arginine decarboxylase low > 86
Shewanella amazonensis SB2B 0.67 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) 0.53 Sama_1963 arginine decarboxylase (RefSeq) low > 62
Shewanella sp. ANA-3 0.66 Shewana3_3091 4-aminobutyrate aminotransferase (RefSeq) 0.54 Shewana3_1624 arginine decarboxylase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.66 SO1276 gabT 4-aminobutyrate aminotransferase (NCBI ptt file) 0.54 SO1870 speA biosynthetic arginine decarboxylase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.51 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) 0.53 Shew_1619 arginine decarboxylase (RefSeq) — —
Marinobacter adhaerens HP15 0.50 HP15_3708 4-aminobutyrate aminotransferase 0.51 HP15_272 biosynthetic arginine decarboxylase low > 73
Lysobacter sp. OAE881 0.25 ABIE51_RS02780 aspartate aminotransferase family protein 0.42 ABIE51_RS00125 arginine decarboxylase — —

Not shown: 3 genomes with orthologs for ECD_02518 only; 28 genomes with orthologs for ECD_02768 only