Conservation of cofitness between ECD_01164 and ECD_01803 in Escherichia coli BL21

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01164 D-amino acid dehydrogenase 1.0 ECD_01803 free methionine-(R)-sulfoxide reductase 0.85 1
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02500 D-amino acid dehydrogenase 1.00 OHPLBJKB_01899 Free methionine-R-sulfoxide reductase low > 73
Escherichia coli ECOR27 1.00 NOLOHH_20725 dadA D-amino acid dehydrogenase 1.00 NOLOHH_16965 msrC L-methionine (R)-S-oxide reductase low > 57
Escherichia coli BW25113 1.00 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 0.89 b1832 yebR free methionine-(R)-sulfoxide reductase (RefSeq) low > 76
Escherichia fergusonii Becca 1.00 EFB2_02743 D-amino acid dehydrogenase 0.99 EFB2_02169 Free methionine-R-sulfoxide reductase low > 86
Escherichia coli ECRC98 1.00 JDDGAC_06220 dadA D-amino acid dehydrogenase 1.00 JDDGAC_01030 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC101 1.00 MCAODC_21880 dadA D-amino acid dehydrogenase 1.00 MCAODC_18950 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC101 1.00 OKFHMN_28290 dadA D-amino acid dehydrogenase 1.00 OKFHMN_26455 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC102 1.00 NIAGMN_27930 dadA D-amino acid dehydrogenase 1.00 NIAGMN_01605 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC62 1.00 BNILDI_18890 dadA D-amino acid dehydrogenase 1.00 BNILDI_15760 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECRC99 1.00 KEDOAH_25305 dadA D-amino acid dehydrogenase 1.00 KEDOAH_01650 msrC L-methionine (R)-S-oxide reductase — —
Escherichia coli ECOR38 1.00 HEPCGN_24750 dadA D-amino acid dehydrogenase 0.98 HEPCGN_04855 msrC L-methionine (R)-S-oxide reductase low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.83 EX28DRAFT_0724 GAF domain-containing protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.78 GFF2847 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 78
Enterobacter sp. TBS_079 0.90 MPMX20_02699 D-amino acid dehydrogenase 0.83 MPMX20_02739 Free methionine-R-sulfoxide reductase low > 85
Klebsiella michiganensis M5al 0.90 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.73 BWI76_RS17985 hypothetical protein low > 92
Serratia liquefaciens MT49 0.82 IAI46_14460 D-amino acid dehydrogenase 0.59 IAI46_10790 GAF domain-containing protein low > 86
Pantoea sp. MT58 0.80 IAI47_08890 D-amino acid dehydrogenase 0.62 IAI47_08695 GAF domain-containing protein low > 76
Rahnella sp. WP5 0.79 EX31_RS10485 D-amino acid dehydrogenase 0.60 EX31_RS24870 GAF domain-containing protein low > 89
Pectobacterium carotovorum WPP14 0.73 HER17_RS11170 D-amino acid dehydrogenase 0.59 HER17_RS11700 GAF domain-containing protein low > 75
Erwinia tracheiphila SCR3 0.72 LU632_RS13070 D-amino acid dehydrogenase 0.61 LU632_RS13260 GAF domain-containing protein low > 74
Dickeya dianthicola ME23 0.72 DZA65_RS11540 D-amino acid dehydrogenase 0.55 DZA65_RS12515 GAF domain-containing protein low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS11195 D-amino acid dehydrogenase 0.54 HGI48_RS12065 GAF domain-containing protein low > 71
Dickeya dadantii 3937 0.71 DDA3937_RS11170 D-amino acid dehydrogenase 0.54 DDA3937_RS11975 GAF domain-containing protein low > 74
Paraburkholderia graminis OAS925 0.71 ABIE53_003133 D-amino-acid dehydrogenase 0.42 ABIE53_001450 L-methionine (R)-S-oxide reductase — —
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_04287 D-amino-acid dehydrogenase 0.40 H281DRAFT_00323 GAF domain-containing protein low > 103
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS14790 D-amino acid dehydrogenase 0.42 BPHYT_RS06285 diguanylate cyclase low > 109
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_0235 D-amino acid dehydrogenase small subunit 0.45 Psyr_3610 GAF low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_0235 D-amino acid dehydrogenase small subunit 0.45 Psyr_3610 GAF — —
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.4621.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.37 Xcc-8004.4532.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain low > 74
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_04065 D-amino acid dehydrogenase small subunit 0.53 CSW01_07525 Free methionine-(R)-sulfoxide reductase low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.53 A4249_RS08770 D-amino acid dehydrogenase 0.33 A4249_RS01025 GAF domain-containing protein low > 48
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3351 Glycine/D-amino acid oxidases (deaminating) 0.42 Ga0059261_3708 GAF domain-containing protein low > 68
Echinicola vietnamensis KMM 6221, DSM 17526 0.16 Echvi_3950 Glycine/D-amino acid oxidases (deaminating) 0.35 Echvi_0965 GAF domain-containing protein low > 79
Shewanella amazonensis SB2B 0.14 Sama_1533 D-amino-acid dehydrogenase (RefSeq) 0.50 Sama_1583 GAF domain-containing protein (RefSeq) low > 62
Phaeobacter inhibens DSM 17395 0.13 PGA1_c05140 D-amino acid dehydrogenase small subunit 0.27 PGA1_c33170 putative sensor protein low > 62
Shewanella loihica PV-4 0.11 Shew_2360 D-hydroxyproline dehydrogenase (from data) 0.51 Shew_1800 putative GAF sensor protein (RefSeq) low > 60

Not shown: 44 genomes with orthologs for ECD_01164 only; 9 genomes with orthologs for ECD_01803 only