Conservation of cofitness between ECD_00971 and ECD_00185 in Escherichia coli BL21

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 1.0 ECD_00185 putative lyase 0.54 42
Escherichia coli BW25113 1.00 b0967 yccW predicted methyltransferase (RefSeq) 0.99 b0187 yaeR orf, hypothetical protein (VIMSS) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 ECOLIN_RS01015 VOC family protein — —
Escherichia coli ECOR27 0.99 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 NOLOHH_02465 yaeR VOC family protein low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 0.98 OHPLBJKB_03476 hypothetical protein low > 73
Escherichia coli ECOR38 0.99 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 HEPCGN_08075 yaeR VOC family protein low > 87
Escherichia coli ECRC98 0.98 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 JDDGAC_13715 yaeR VOC family protein low > 86
Escherichia coli ECRC62 0.98 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 BNILDI_09205 yaeR VOC family protein low > 75
Escherichia coli ECRC101 0.98 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 MCAODC_00635 yaeR VOC family protein low > 87
Escherichia coli ECRC102 0.98 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 NIAGMN_07970 yaeR VOC family protein — —
Escherichia coli ECRC100 0.98 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 OKFHMN_10120 yaeR VOC family protein low > 80
Escherichia coli ECRC99 0.98 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 KEDOAH_18035 yaeR VOC family protein — —
Escherichia fergusonii Becca 0.98 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 0.99 EFB2_03857 hypothetical protein low > 86
Enterobacter asburiae PDN3 0.95 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.90 EX28DRAFT_3775 Lactoylglutathione lyase and related lyases low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.91 MPMX20_00871 hypothetical protein low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF3258 LSU m5C1962 methyltransferase RlmI 0.89 GFF34 FIG01280259: hypothetical protein low > 78
Klebsiella michiganensis M5al 0.90 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.89 BWI76_RS05305 VOC family protein — —
Pantoea sp. MT58 0.87 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.68 IAI47_15440 VOC family protein low > 76
Serratia liquefaciens MT49 0.85 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.78 IAI46_20160 VOC family protein low > 86
Erwinia tracheiphila SCR3 0.83 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.74 LU632_RS19875 VOC family protein low > 74
Rahnella sp. WP5 0.82 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.75 EX31_RS12945 VOC family protein low > 89
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_06820 ribosomal RNA large subunit methyltransferase I 0.56 CSW01_18595 VOC family protein low > 62
Shewanella sp. ANA-3 0.60 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) 0.51 Shewana3_2315 glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.56 SO2155 glyoxalase family protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.56 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.61 MIT1002_03753 putative lyase low > 70
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.54 H281DRAFT_02954 glyoxylase I family protein low > 103
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase 0.59 CA265_RS05200 hypothetical protein low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS22040 class I SAM-dependent rRNA methyltransferase 0.64 ABZR88_RS09770 VOC family protein low > 71
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI 0.47 Ac3H11_2068 FIG01280259: hypothetical protein — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_3350 Predicted SAM-dependent methyltransferases 0.65 Echvi_2363 Predicted ring-cleavage extradiol dioxygenase low > 79
Lysobacter sp. OAE881 0.31 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase 0.51 ABIE51_RS00375 VOC family protein low > 62
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI 0.63 Xcc-8004.3591.1 FIG01280259: hypothetical protein low > 74
Pseudomonas stutzeri RCH2 0.26 Psest_0236 Predicted SAM-dependent methyltransferases 0.57 Psest_0758 Lactoylglutathione lyase and related lyases low > 67
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase 0.47 OKGIIK_07490 VOC family protein low > 52

Not shown: 48 genomes with orthologs for ECD_00971 only; 7 genomes with orthologs for ECD_00185 only