Conservation of cofitness between ECD_02087 and ECD_00142 in Escherichia coli BL21

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02087 UPF0324 family inner membrane protein 1.0 ECD_00142 poly(A) polymerase 0.35 37
Escherichia coli ECRC98 1.00 JDDGAC_27450 yeiH UPF0324 membrane protein YeiH 1.00 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB low > 86
Escherichia coli ECRC102 1.00 NIAGMN_21255 yeiH UPF0324 membrane protein YeiH 1.00 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECRC99 1.00 KEDOAH_04695 yeiH UPF0324 membrane protein YeiH 1.00 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECRC62 1.00 BNILDI_13985 yeiH UPF0324 membrane protein YeiH 1.00 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.81 17
Escherichia coli ECOR27 1.00 NOLOHH_15065 yeiH UPF0324 membrane protein YeiH 1.00 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB low > 75
Escherichia coli ECRC100 1.00 OKFHMN_23490 yeiH UPF0324 membrane protein YeiH 1.00 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01553 hypothetical protein 1.00 OHPLBJKB_03519 Poly(A) polymerase I low > 73
Escherichia coli ECRC101 1.00 MCAODC_14540 yeiH UPF0324 membrane protein YeiH 1.00 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB low > 87
Escherichia coli BW25113 1.00 b2158 yeiH conserved inner membrane protein (NCBI) 1.00 b0143 pcnB poly(A) polymerase I (VIMSS) low > 76
Escherichia coli ECOR38 1.00 HEPCGN_22755 yeiH UPF0324 membrane protein YeiH 1.00 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS12635 YeiH family protein 1.00 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB low > 55
Escherichia fergusonii Becca 1.00 EFB2_01698 hypothetical protein 1.00 EFB2_03901 Poly(A) polymerase I low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF3775 Putative membrane protein YeiH 0.88 GFF89 Poly(A) polymerase (EC 2.7.7.19) low > 78
Enterobacter sp. TBS_079 0.86 MPMX20_03129 hypothetical protein 0.85 MPMX20_00829 Poly(A) polymerase I low > 85
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0398 conserved hypothetical integral membrane protein 0.85 EX28DRAFT_3732 poly(A) polymerase low > 76
Klebsiella michiganensis M5al 0.83 BWI76_RS19695 membrane protein 0.83 BWI76_RS05005 polynucleotide adenylyltransferase low > 92
Serratia liquefaciens MT49 0.61 IAI46_17220 YeiH family putative sulfate export transporter 0.77 IAI46_21220 polynucleotide adenylyltransferase PcnB low > 86
Pantoea sp. MT58 0.53 IAI47_06670 YeiH family putative sulfate export transporter 0.78 IAI47_15645 polynucleotide adenylyltransferase PcnB low > 76
Dickeya dadantii 3937 0.51 DDA3937_RS09255 YeiH family putative sulfate export transporter 0.77 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB low > 74
Erwinia tracheiphila SCR3 0.50 LU632_RS17300 YeiH family putative sulfate export transporter 0.77 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB low > 74
Dickeya dianthicola ME23 0.50 DZA65_RS09585 YeiH family putative sulfate export transporter 0.77 DZA65_RS17145 polynucleotide adenylyltransferase PcnB low > 75
Dickeya dianthicola 67-19 0.49 HGI48_RS09280 YeiH family putative sulfate export transporter 0.77 HGI48_RS16060 polynucleotide adenylyltransferase PcnB low > 71
Pectobacterium carotovorum WPP14 0.48 HER17_RS12845 YeiH family protein 0.75 HER17_RS05570 polynucleotide adenylyltransferase PcnB low > 75
Variovorax sp. SCN45 0.42 GFF1741 UPF0324 inner membrane protein YeiH 0.33 GFF3943 Poly(A) polymerase (EC 2.7.7.19) low > 127
Dechlorosoma suillum PS 0.31 Dsui_2230 conserved hypothetical integral membrane protein 0.36 Dsui_1515 poly(A) polymerase low > 51
Pseudomonas putida KT2440 0.31 PP_3661 conserved membrane protein of unknown function, UPF0324 family 0.42 PP_4697 poly(A) polymerase low > 96
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS10370 YeiH family protein 0.36 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB low > 80
Ralstonia solanacearum PSI07 0.29 RPSI07_RS18650 YeiH family putative sulfate export transporter 0.36 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB low > 81
Rhodanobacter denitrificans FW104-10B01 0.20 LRK54_RS12830 YeiH family protein 0.45 LRK54_RS15105 polynucleotide adenylyltransferase PcnB low > 59
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_02225 Conserved hypothetical integral membrane protein 0.45 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase low > 52
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS19775 YeiH family protein 0.44 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB low > 74
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_4898 Inner membrane protein 0.41 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) low > 87
Pseudomonas fluorescens FW300-N1B4 0.19 Pf1N1B4_5992 Inner membrane protein 0.41 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) — —
Pseudomonas fluorescens FW300-N2E3 0.18 AO353_21030 hypothetical protein 0.41 AO353_14395 poly(A) polymerase low > 101
Rhodanobacter denitrificans MT42 0.18 LRK55_RS12530 putative sulfate exporter family transporter 0.45 LRK55_RS14820 polynucleotide adenylyltransferase PcnB low > 63
Alteromonas macleodii MIT1002 0.18 MIT1002_03827 hypothetical protein 0.53 MIT1002_03692 Poly(A) polymerase I precursor low > 70
Shewanella oneidensis MR-1 0.14 SO4708 conserved hypothetical protein (NCBI ptt file) 0.54 SO0872 pcnB polyA polymerase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.14 Shewana3_4061 hypothetical protein (RefSeq) 0.54 Shewana3_3406 poly(A) polymerase (RefSeq) low > 73
Shewanella loihica PV-4 0.14 Shew_3668 hypothetical protein (RefSeq) 0.52 Shew_3131 poly(A) polymerase (RefSeq) low > 60

Not shown: 27 genomes with orthologs for ECD_02087 only; 20 genomes with orthologs for ECD_00142 only