Conservation of cofitness between CSW01_10710 and CSW01_13340 in Vibrio cholerae E7946 ATCC 55056

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10710 deferrochelatase 1.0 CSW01_13340 DNA-binding transcriptional regulator OxyR 0.87 1
Serratia liquefaciens MT49 0.43 IAI46_18515 Dyp-type peroxidase 0.68 IAI46_24475 DNA-binding transcriptional regulator OxyR low > 87
Rahnella sp. WP5 0.42 EX31_RS20230 Dyp-type peroxidase 0.67 EX31_RS14170 DNA-binding transcriptional regulator OxyR low > 89
Dickeya dianthicola 67-19 0.41 HGI48_RS04395 Dyp-type peroxidase 0.67 HGI48_RS20405 DNA-binding transcriptional regulator OxyR 0.68 11
Dickeya dadantii 3937 0.41 DDA3937_RS04420 Dyp-type peroxidase 0.66 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR 0.66 8
Dickeya dianthicola ME23 0.41 DZA65_RS04310 Dyp-type peroxidase 0.67 DZA65_RS21450 DNA-binding transcriptional regulator OxyR low > 75
Klebsiella michiganensis M5al 0.40 BWI76_RS20710 dyp-type peroxidase family protein 0.65 BWI76_RS00865 DNA-binding transcriptional regulator OxyR low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01291 putative deferrochelatase/peroxidase YfeX 0.66 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator 0.47 60
Escherichia coli BW25113 0.40 b2431 b2431 orf, hypothetical protein (VIMSS) 0.66 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.27 6
Escherichia coli ECRC101 0.40 MCAODC_12650 yfeX porphyrinogen peroxidase 0.66 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR low > 87
Klebsiella pneumoniae MKP103 0.40 KDGMDA_27550 peroxidase 0.66 KDGMDA_09380 DNA-binding transcriptional regulator OxyR low > 95
Escherichia coli ECRC98 0.40 JDDGAC_26070 yfeX porphyrinogen peroxidase 0.66 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR low > 87
Escherichia coli ECRC99 0.40 KEDOAH_06100 yfeX porphyrinogen peroxidase 0.66 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC100 0.40 OKFHMN_22120 yfeX porphyrinogen peroxidase 0.66 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR low > 79
Escherichia coli ECRC102 0.40 NIAGMN_19890 yfeX porphyrinogen peroxidase 0.66 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR low > 80
Escherichia coli ECOR27 0.40 NOLOHH_13800 yfeX porphyrinogen peroxidase 0.66 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR low > 76
Enterobacter sp. TBS_079 0.40 MPMX20_03318 Dye-decolorizing peroxidase YfeX 0.66 MPMX20_04519 Hydrogen peroxide-inducible genes activator low > 85
Escherichia coli Nissle 1917 0.40 ECOLIN_RS13940 porphyrinogen peroxidase 0.66 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR low > 55
Escherichia coli ECOR38 0.40 HEPCGN_21295 yfeX porphyrinogen peroxidase 0.66 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR low > 88
Escherichia fergusonii Becca 0.40 EFB2_01448 Dye-decolorizing peroxidase YfeX 0.66 EFB2_04651 Hydrogen peroxide-inducible genes activator low > 86
Pectobacterium carotovorum WPP14 0.40 HER17_RS17230 Dyp-type peroxidase 0.66 HER17_RS00955 DNA-binding transcriptional regulator OxyR low > 75
Escherichia coli BL21 0.40 ECD_02331 porphyrinogen oxidase, cytoplasmic 0.66 ECD_03846 oxidative and nitrosative stress transcriptional regulator 0.71 6
Escherichia coli ECRC62 0.40 BNILDI_12665 yfeX porphyrinogen peroxidase 0.66 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR low > 75
Enterobacter asburiae PDN3 0.39 EX28DRAFT_0204 Dyp-type peroxidase family 0.66 EX28DRAFT_4424 Transcriptional regulator — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF2061 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup 0.66 GFF2347 Hydrogen peroxide-inducible genes activator low > 78
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS30665 peroxidase 0.37 BPHYT_RS03470 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_25350 peroxidase 0.33 AO353_09315 LysR family transcriptional regulator low > 101
Pseudomonas simiae WCS417 0.30 PS417_11115 peroxidase 0.33 PS417_27865 LysR family transcriptional regulator low > 88
Bacteroides ovatus ATCC 8483 0.29 BACOVA_00506 Dyp-type peroxidase family protein 0.28 BACOVA_05567 LysR substrate binding domain protein low > 96
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS01625 Dyp-type peroxidase 0.40 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR low > 74
Mycobacterium tuberculosis H37Rv 0.29 Rv0799c Conserved protein 0.14 Rv0117 Oxidative stress response regulatory protein OxyS low > 58
Bacteroides thetaiotaomicron VPI-5482 0.28 BT1219 conserved hypothetical protein (NCBI ptt file) 0.31 BT4716 redox-sensitive transcriptional activator (NCBI ptt file) low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS13340 Dyp-type peroxidase 0.29 ABZR88_RS18535 hydrogen peroxide-inducible genes activator low > 71
Paraburkholderia graminis OAS925 0.26 ABIE53_006344 putative iron-dependent peroxidase 0.37 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator low > 113
Alteromonas macleodii MIT1002 0.26 MIT1002_00420 putative deferrochelatase/peroxidase YfeX 0.25 MIT1002_01120 Morphology and auto-aggregation control protein low > 70
Pseudomonas sp. DMC3 0.19 GFF3728 Dye-decolorizing peroxidase YfeX 0.32 GFF426 Hydrogen peroxide-inducible genes activator low > 89
Pseudomonas sp. RS175 0.19 PFR28_01310 Dye-decolorizing peroxidase YfeX 0.32 PFR28_04434 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N1B4 0.18 Pf1N1B4_5683 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup 0.33 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens GW456-L13 0.18 PfGW456L13_2809 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup 0.33 PfGW456L13_773 Hydrogen peroxide-inducible genes activator — —
Pseudomonas fluorescens FW300-N2C3 0.17 AO356_01290 peroxidase 0.32 AO356_12385 LysR family transcriptional regulator — —
Pseudomonas putida KT2440 0.17 PP_3248 Dyp-type peroxidase family protein 0.34 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.43 8
Pseudomonas sp. BP01 0.17 JOY50_RS26550 Dyp-type peroxidase 0.34 JOY50_RS08950 hydrogen peroxide-inducible genes activator low > 84

Not shown: 8 genomes with orthologs for CSW01_10710 only; 59 genomes with orthologs for CSW01_13340 only