| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_09640 | | C4-dicarboxylate ABC transporter permease | 1.0 | CSW01_13325 | | pilus assembly protein PilN | 0.50 | 17 |
| Pseudomonas sp. RS175 | 0.57 | PFR28_00121 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.20 | PFR28_05008 | | hypothetical protein | low | > 88 |
| Shewanella oneidensis MR-1 | 0.56 | SO3136 | dctM | C4-dicarboxylate transport protein (NCBI ptt file) | 0.24 | SO0282 | | type IV pilus biogenesis protein PilN (NCBI ptt file) | low | > 76 |
| Pseudomonas sp. DMC3 | 0.56 | GFF1144 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.19 | GFF3095 | | hypothetical protein | low | > 89 |
| Shewanella sp. ANA-3 | 0.55 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | 0.25 | Shewana3_3898 | | fimbrial assembly family protein (RefSeq) | low | > 73 |
| Pseudomonas aeruginosa MRSN321 | 0.54 | DY961_RS11695 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.23 | DY961_RS11035 | pilN;inference=COORDINATES | type 4a pilus biogenesis protein PilN | low | > 100 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_4270 | | TRAP transporter, DctM subunit | 0.23 | Psest_3718 | | Tfp pilus assembly protein PilN | low | > 67 |
| Pseudomonas aeruginosa PA14 | 0.54 | IKLFDK_27640 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.23 | IKLFDK_28315 | | type 4a pilus biogenesis protein PilN | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.54 | DQ20_RS50405 | dctM;inference=COORDINATES | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.23 | DQ20_RS51040 | pilN;inference=COORDINATES | type 4a pilus biogenesis protein PilN | low | > 101 |
| Shewanella amazonensis SB2B | 0.53 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | 0.25 | Sama_3372 | | type IV pilus biogenesis protein PilN (RefSeq) | low | > 62 |
| Pseudomonas segetis P6 | 0.53 | MPMX49_04381 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.23 | MPMX49_04238 | | hypothetical protein | low | > 75 |
| Shewanella loihica PV-4 | 0.52 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | 0.24 | Shew_0209 | | fimbrial assembly family protein (RefSeq) | low | > 60 |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | 0.17 | PFLU_RS02010 | | fimbriae biosynthesis protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | 0.17 | PFLU_RS02010 | | fimbriae biosynthesis protein | low | > 109 |
| Pseudomonas simiae WCS417 | 0.50 | PS417_14900 | | C4-dicarboxylate ABC transporter permease | 0.17 | PS417_01965 | | fimbriae biosynthesis protein | low | > 88 |
| Dechlorosoma suillum PS | 0.46 | Dsui_3153 | | TRAP transporter, DctM subunit | 0.27 | Dsui_1188 | | Tfp pilus assembly protein PilN | low | > 51 |
| Variovorax sp. SCN45 | 0.33 | GFF6470 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.18 | GFF5320 | | Type IV pilus biogenesis protein PilN | low | > 127 |
| Pseudomonas orientalis W4I3 | 0.32 | QF045_RS19040 | | TRAP transporter large permease | 0.13 | QF045_RS05030 | | PilN domain-containing protein | low | > 93 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.23 | Psyr_0404 | | Fimbrial assembly | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.23 | Psyr_0404 | | Fimbrial assembly | low | > 86 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS19635 | | TRAP transporter large permease | 0.18 | ABID97_RS23280 | | PilN domain-containing protein | low | > 91 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.16 | Pf6N2E2_3759 | | Type IV pilus biogenesis protein PilN | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_23045 | | hypothetical protein | 0.16 | AO356_09410 | | pilus assembly protein PilN | low | > 104 |
| Pseudomonas sp. BP01 | 0.31 | JOY50_RS02045 | | TRAP transporter large permease | 0.15 | JOY50_RS09285 | | PilN domain-containing protein | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.31 | GEMAOFIL_03770 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.19 | GEMAOFIL_00626 | | hypothetical protein | — | — |
| Pseudomonas putida KT2440 | 0.30 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | 0.18 | PP_5082 | | Type IV pili biogenesis protein PilN | low | > 96 |
| Alteromonas macleodii MIT1002 | 0.29 | MIT1002_02428 | | Neu5Ac permease | 0.25 | MIT1002_00452 | | Fimbrial assembly protein (PilN) | low | > 70 |
| Ralstonia sp. UNC404CL21Col | 0.24 | ABZR87_RS21100 | | TRAP transporter large permease | 0.18 | ABZR87_RS02615 | | PilN domain-containing protein | low | > 80 |
Not shown: 21 genomes with orthologs for CSW01_09640 only; 13 genomes with orthologs for CSW01_13325 only