Conservation of cofitness between CSW01_07545 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.75 1
Escherichia coli ECRC101 0.55 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 0.54 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC100 0.54 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC98 0.54 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC102 0.54 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR38 0.54 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 88
Escherichia coli ECRC62 0.54 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR27 0.54 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Escherichia coli BL21 0.54 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase — —
Escherichia coli BW25113 0.54 b1835 yebU putative nucleolar proteins (VIMSS) 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.77 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Escherichia fergusonii Becca 0.54 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS02510 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.76 PagCFBP13505_RS21685 ribulose-phosphate 3-epimerase — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.78 EX28DRAFT_4156 ribulose-phosphate 3-epimerase low > 76
Pantoea sp. MT58 0.53 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.76 IAI47_01910 ribulose-phosphate 3-epimerase — —
Enterobacter sp. TBS_079 0.52 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.77 MPMX20_04275 Ribulose-phosphate 3-epimerase low > 85
Serratia liquefaciens MT49 0.52 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.76 IAI46_23685 ribulose-phosphate 3-epimerase low > 87
Dickeya dadantii 3937 0.51 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.75 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola 67-19 0.51 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.76 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Pectobacterium carotovorum WPP14 0.51 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.76 HER17_RS01795 ribulose-phosphate 3-epimerase low > 75
Klebsiella michiganensis M5al 0.51 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Erwinia amylovora T8 0.51 OLJFJH_12985 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.76 OLJFJH_04075 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola ME23 0.51 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.76 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Klebsiella pneumoniae MKP103 0.50 KDGMDA_25270 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.78 KDGMDA_06895 ribulose-phosphate 3-epimerase — —
Rahnella sp. WP5 0.50 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.74 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Shewanella oneidensis MR-1 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.50 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Shewanella loihica PV-4 0.48 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.77 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) — —
Shewanella amazonensis SB2B 0.44 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.77 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase 0.69 B158DRAFT_0267 ribulose-phosphate 3-epimerase — —
Bacteroides thetaiotaomicron VPI-5482 0.16 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) 0.40 BT3946 ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_05610 rRNA methyltransferase 0.42 CA264_21180 ribulose-phosphate 3-epimerase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS00225 RNA methyltransferase 0.42 ABZR88_RS06500 ribulose-phosphate 3-epimerase — —
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase 0.39 HMPREF1181_RS06505 ribulose-phosphate 3-epimerase low > 56
Bacteroides ovatus ATCC 8483 0.15 BACOVA_00671 NOL1/NOP2/sun family protein 0.40 BACOVA_01203 ribulose-phosphate 3-epimerase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1153 tRNA and rRNA cytosine-C5-methylases 0.41 Echvi_3575 ribulose-phosphate 3-epimerase low > 79
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase 0.39 HMPREF1078_RS00800 ribulose-phosphate 3-epimerase — —
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase 0.42 HMPREF1058_RS07710 ribulose-phosphate 3-epimerase — —
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS09930 rRNA cytosine-C5-methyltransferase 0.41 ABI39_RS00225 ribulose-phosphate 3-epimerase — —
Desulfovibrio vulgaris Miyazaki F 0.11 DvMF_2026 Fmu (Sun) domain protein (RefSeq) 0.38 DvMF_0977 Ribulose-phosphate 3-epimerase (RefSeq) — —

Not shown: 0 genomes with orthologs for CSW01_07545 only; 80 genomes with orthologs for CSW01_13285 only