Conservation of cofitness between CSW01_00835 and CSW01_12980 in Vibrio cholerae E7946 ATCC 55056

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00835 HTH-type transcriptional activator IlvY 1.0 CSW01_12980 ATP-dependent RNA helicase DbpA 0.49 10
Shewanella sp. ANA-3 0.51 Shewana3_0354 DNA-binding transcriptional regulator IlvY (RefSeq) 0.67 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.51 SO4350 ilvY transcriptional regulator ilvY (NCBI ptt file) 0.66 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.48 IAI46_24330 HTH-type transcriptional activator IlvY 0.55 IAI46_14765 ATP-dependent RNA helicase DbpA 0.42 13
Shewanella amazonensis SB2B 0.48 Sama_3283 DNA-binding transcriptional regulator IlvY (RefSeq) 0.68 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) low > 62
Rahnella sp. WP5 0.47 EX31_RS15015 HTH-type transcriptional activator IlvY 0.52 EX31_RS24740 ATP-dependent RNA helicase DbpA low > 89
Erwinia tracheiphila HP pepo 2.2 0.47 IJEDHG_09105 ilvY HTH-type transcriptional activator IlvY 0.48 IJEDHG_24880 dbpA ATP-dependent RNA helicase DbpA low > 61
Erwinia tracheiphila SCR3 0.47 LU632_RS24390 ilvY HTH-type transcriptional activator IlvY 0.48 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA low > 73
Dickeya dianthicola 67-19 0.47 HGI48_RS20275 HTH-type transcriptional activator IlvY 0.52 HGI48_RS11065 ATP-dependent RNA helicase DbpA low > 71
Erwinia amylovora T8 0.46 OLJFJH_06240 HTH-type transcriptional activator IlvY 0.52 OLJFJH_13775 ATP-dependent RNA helicase DbpA low > 58
Dickeya dianthicola ME23 0.46 DZA65_RS21315 HTH-type transcriptional activator IlvY 0.52 DZA65_RS11470 ATP-dependent RNA helicase DbpA low > 75
Dickeya dadantii 3937 0.46 DDA3937_RS20135 HTH-type transcriptional activator IlvY 0.53 DDA3937_RS11045 ATP-dependent RNA helicase DbpA low > 74
Pantoea sp. MT58 0.46 IAI47_01045 HTH-type transcriptional activator IlvY 0.49 IAI47_15055 ATP-dependent RNA helicase DbpA low > 76
Pantoea agglomerans CFBP13505 P0401 0.46 PagCFBP13505_RS20920 HTH-type transcriptional activator IlvY 0.49 PagCFBP13505_RS10105 ATP-dependent RNA helicase DbpA low > 74
Shewanella loihica PV-4 0.45 Shew_0287 DNA-binding transcriptional regulator IlvY (RefSeq) 0.62 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.45 HER17_RS01095 HTH-type transcriptional activator IlvY 0.53 HER17_RS06775 ATP-dependent RNA helicase DbpA low > 75
Escherichia coli ECRC98 0.44 JDDGAC_18250 ilvY HTH-type transcriptional activator IlvY 0.52 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA low > 87
Escherichia coli ECRC99 0.44 KEDOAH_13520 ilvY HTH-type transcriptional activator IlvY 0.52 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_04280 HTH-type transcriptional regulator GltC 0.52 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA low > 74
Escherichia coli ECRC100 0.44 OKFHMN_14630 ilvY HTH-type transcriptional activator IlvY 0.52 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA low > 79
Escherichia coli ECRC102 0.44 NIAGMN_12385 ilvY HTH-type transcriptional activator IlvY 0.52 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA low > 80
Escherichia coli BW25113 0.44 b3773 ilvY DNA-binding transcriptional dual regulator (NCBI) 0.52 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) low > 76
Escherichia coli BL21 0.44 ECD_03651 transcriptional activator of ilvC; autorepressor 0.52 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA low > 61
Escherichia coli ECOR27 0.44 NOLOHH_06765 ilvY HTH-type transcriptional activator IlvY 0.52 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA low > 76
Escherichia coli ECRC101 0.44 MCAODC_05135 ilvY HTH-type transcriptional activator IlvY 0.52 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA low > 87
Enterobacter asburiae PDN3 0.44 EX28DRAFT_4445 Transcriptional regulator 0.51 EX28DRAFT_1006 Superfamily II DNA and RNA helicases low > 76
Escherichia coli Nissle 1917 0.44 ECOLIN_RS21675 HTH-type transcriptional activator IlvY 0.52 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA low > 55
Escherichia fergusonii Becca 0.44 EFB2_04863 HTH-type transcriptional regulator HdfR 0.52 EFB2_02584 ATP-dependent RNA helicase DbpA 0.32 53
Escherichia coli ECOR38 0.44 HEPCGN_13340 ilvY HTH-type transcriptional activator IlvY 0.52 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA low > 88
Enterobacter sp. TBS_079 0.44 MPMX20_04497 HTH-type transcriptional regulator GltC 0.51 MPMX20_02441 ATP-dependent RNA helicase DbpA low > 85
Escherichia coli ECRC62 0.44 BNILDI_04760 ilvY HTH-type transcriptional activator IlvY 0.52 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA low > 75
Klebsiella pneumoniae MKP103 0.43 KDGMDA_09500 HTH-type transcriptional activator IlvY 0.52 KDGMDA_20600 ATP-dependent RNA helicase DbpA low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF2897 HTH-type transcriptional regulator IlvY 0.52 GFF2649 ATP-dependent 23S rRNA helicase DbpA low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS00985 transcriptional regulator IlvY 0.50 BWI76_RS12705 ATP-dependent RNA helicase low > 92
Alteromonas macleodii MIT1002 0.41 MIT1002_04044 HTH-type transcriptional regulator GltC 0.45 MIT1002_03748 ATP-independent RNA helicase DbpA — —
Pseudomonas sp. S08-1 0.40 OH686_08120 Transcriptional regulator IlvY, LysR family 0.52 OH686_14770 ATP-dependent 23S rRNA helicase DbpA low > 80
Pseudomonas segetis P6 0.38 MPMX49_01276 HTH-type transcriptional activator CmpR 0.53 MPMX49_00675 ATP-dependent RNA helicase DbpA low > 75
Paraburkholderia sabiae LMG 24235 0.15 QEN71_RS19835 LysR family transcriptional regulator 0.51 QEN71_RS00065 ATP-dependent RNA helicase DbpA low > 153
Pseudomonas stutzeri RCH2 0.15 Psest_2671 Transcriptional regulator 0.53 Psest_0344 Superfamily II DNA and RNA helicases low > 67
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS02220 LysR family transcriptional regulator 0.53 RR42_RS00295 DEAD/DEAH box helicase low > 128
Pseudomonas aeruginosa PUPa3 0.15 DQ20_RS44715 LysR substrate-binding domain-containing protein 0.54 DQ20_RS37055 dbpA;go_function=nucleic ATP-dependent RNA helicase DbpA low > 101
Pseudomonas aeruginosa PA14 0.15 IKLFDK_03890 LysR family transcriptional regulator 0.54 IKLFDK_23155 ATP-dependent RNA helicase DbpA low > 98
Pseudomonas aeruginosa MRSN321 0.14 DY961_RS08085 LysR substrate-binding domain-containing protein 0.54 DY961_RS22265 dbpA;go_function=nucleic ATP-dependent RNA helicase DbpA low > 100
Variovorax sp. OAS795 0.14 ABID97_RS27255 LysR substrate-binding domain-containing protein 0.51 ABID97_RS02340 ATP-dependent RNA helicase DbpA low > 91
Ralstonia solanacearum PSI07 0.13 RPSI07_RS00305 LysR family transcriptional regulator 0.53 RPSI07_RS20905 ATP-dependent RNA helicase DbpA low > 81

Not shown: 3 genomes with orthologs for CSW01_00835 only; 37 genomes with orthologs for CSW01_12980 only