Conservation of cofitness between CSW01_13340 and CSW01_10710 in Vibrio cholerae E7946 ATCC 55056

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13340 DNA-binding transcriptional regulator OxyR 1.0 CSW01_10710 deferrochelatase 0.87 1
Serratia liquefaciens MT49 0.68 IAI46_24475 DNA-binding transcriptional regulator OxyR 0.43 IAI46_18515 Dyp-type peroxidase low > 87
Dickeya dianthicola 67-19 0.67 HGI48_RS20405 DNA-binding transcriptional regulator OxyR 0.41 HGI48_RS04395 Dyp-type peroxidase low > 71
Rahnella sp. WP5 0.67 EX31_RS14170 DNA-binding transcriptional regulator OxyR 0.42 EX31_RS20230 Dyp-type peroxidase low > 89
Dickeya dianthicola ME23 0.67 DZA65_RS21450 DNA-binding transcriptional regulator OxyR 0.41 DZA65_RS04310 Dyp-type peroxidase low > 75
Enterobacter sp. TBS_079 0.66 MPMX20_04519 Hydrogen peroxide-inducible genes activator 0.40 MPMX20_03318 Dye-decolorizing peroxidase YfeX low > 85
Dickeya dadantii 3937 0.66 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR 0.41 DDA3937_RS04420 Dyp-type peroxidase 0.66 9
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4424 Transcriptional regulator 0.39 EX28DRAFT_0204 Dyp-type peroxidase family — —
Pectobacterium carotovorum WPP14 0.66 HER17_RS00955 DNA-binding transcriptional regulator OxyR 0.40 HER17_RS17230 Dyp-type peroxidase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF2347 Hydrogen peroxide-inducible genes activator 0.39 GFF2061 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup low > 78
Klebsiella pneumoniae MKP103 0.66 KDGMDA_09380 DNA-binding transcriptional regulator OxyR 0.40 KDGMDA_27550 peroxidase low > 95
Escherichia coli Nissle 1917 0.66 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR 0.40 ECOLIN_RS13940 porphyrinogen peroxidase low > 55
Escherichia coli ECOR27 0.66 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR 0.40 NOLOHH_13800 yfeX porphyrinogen peroxidase low > 76
Escherichia coli BW25113 0.66 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.40 b2431 b2431 orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECRC100 0.66 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR 0.40 OKFHMN_22120 yfeX porphyrinogen peroxidase low > 79
Escherichia coli BL21 0.66 ECD_03846 oxidative and nitrosative stress transcriptional regulator 0.40 ECD_02331 porphyrinogen oxidase, cytoplasmic 0.71 9
Escherichia coli ECRC98 0.66 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR 0.40 JDDGAC_26070 yfeX porphyrinogen peroxidase low > 87
Escherichia coli ECRC99 0.66 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR 0.40 KEDOAH_06100 yfeX porphyrinogen peroxidase — —
Escherichia coli ECRC101 0.66 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR 0.40 MCAODC_12650 yfeX porphyrinogen peroxidase low > 87
Escherichia coli ECRC102 0.66 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR 0.40 NIAGMN_19890 yfeX porphyrinogen peroxidase low > 80
Escherichia fergusonii Becca 0.66 EFB2_04651 Hydrogen peroxide-inducible genes activator 0.40 EFB2_01448 Dye-decolorizing peroxidase YfeX low > 86
Escherichia coli ECOR38 0.66 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR 0.40 HEPCGN_21295 yfeX porphyrinogen peroxidase low > 88
Escherichia coli ECRC62 0.66 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR 0.40 BNILDI_12665 yfeX porphyrinogen peroxidase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator 0.40 OHPLBJKB_01291 putative deferrochelatase/peroxidase YfeX 0.47 11
Klebsiella michiganensis M5al 0.65 BWI76_RS00865 DNA-binding transcriptional regulator OxyR 0.40 BWI76_RS20710 dyp-type peroxidase family protein low > 92
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR 0.29 ABZR86_RS01625 Dyp-type peroxidase low > 74
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS03470 LysR family transcriptional regulator 0.32 BPHYT_RS30665 peroxidase low > 109
Paraburkholderia graminis OAS925 0.37 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator 0.26 ABIE53_006344 putative iron-dependent peroxidase low > 113
Pseudomonas putida KT2440 0.34 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.17 PP_3248 Dyp-type peroxidase family protein 0.43 16
Pseudomonas sp. BP01 0.34 JOY50_RS08950 hydrogen peroxide-inducible genes activator 0.17 JOY50_RS26550 Dyp-type peroxidase low > 84
Pseudomonas simiae WCS417 0.33 PS417_27865 LysR family transcriptional regulator 0.30 PS417_11115 peroxidase low > 88
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_09315 LysR family transcriptional regulator 0.30 AO353_25350 peroxidase low > 101
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_773 Hydrogen peroxide-inducible genes activator 0.18 PfGW456L13_2809 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup — —
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator 0.18 Pf1N1B4_5683 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup — —
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_12385 LysR family transcriptional regulator 0.17 AO356_01290 peroxidase — —
Pseudomonas sp. RS175 0.32 PFR28_04434 Hydrogen peroxide-inducible genes activator 0.19 PFR28_01310 Dye-decolorizing peroxidase YfeX — —
Pseudomonas sp. DMC3 0.32 GFF426 Hydrogen peroxide-inducible genes activator 0.19 GFF3728 Dye-decolorizing peroxidase YfeX low > 89
Bacteroides thetaiotaomicron VPI-5482 0.31 BT4716 redox-sensitive transcriptional activator (NCBI ptt file) 0.28 BT1219 conserved hypothetical protein (NCBI ptt file) low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS18535 hydrogen peroxide-inducible genes activator 0.27 ABZR88_RS13340 Dyp-type peroxidase low > 71
Bacteroides ovatus ATCC 8483 0.28 BACOVA_05567 LysR substrate binding domain protein 0.29 BACOVA_00506 Dyp-type peroxidase family protein low > 96
Alteromonas macleodii MIT1002 0.25 MIT1002_01120 Morphology and auto-aggregation control protein 0.26 MIT1002_00420 putative deferrochelatase/peroxidase YfeX low > 70
Mycobacterium tuberculosis H37Rv 0.14 Rv0117 Oxidative stress response regulatory protein OxyS 0.29 Rv0799c Conserved protein low > 58

Not shown: 59 genomes with orthologs for CSW01_13340 only; 8 genomes with orthologs for CSW01_10710 only