Conservation of cofitness between CSW01_03280 and CSW01_10265 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03280 16S rRNA methyltransferase 1.0 CSW01_10265 c-type cytochrome biogenesis protein CcmF 0.81 2
Pectobacterium carotovorum WPP14 0.39 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.63 HER17_RS09055 heme lyase CcmF/NrfE family subunit low > 75
Escherichia coli BL21 0.39 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent 0.60 ECD_02123 heme lyase, CcmF subunit low > 61
Escherichia coli BW25113 0.39 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) 0.60 b2196 ccmF heme lyase, CcmF subunit (NCBI) low > 76
Escherichia coli ECRC101 0.39 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 MCAODC_14355 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Escherichia coli ECRC102 0.39 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 NIAGMN_21070 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Serratia liquefaciens MT49 0.39 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.65 IAI46_18085 heme lyase CcmF/NrfE family subunit low > 86
Escherichia coli ECRC98 0.39 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 JDDGAC_27265 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 86
Escherichia coli ECRC100 0.39 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 OKFHMN_23305 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 80
Escherichia coli Nissle 1917 0.39 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 ECOLIN_RS12835 cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C 0.60 OHPLBJKB_01515 Cytochrome c-type biogenesis protein CcmF low > 73
Escherichia coli ECRC99 0.39 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 KEDOAH_04880 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECOR38 0.39 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 HEPCGN_22570 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Escherichia coli ECOR27 0.38 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 NOLOHH_14880 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 75
Escherichia coli ECRC62 0.38 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 BNILDI_13800 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 75
Escherichia fergusonii Becca 0.38 EFB2_04076 Ribosomal RNA small subunit methyltransferase C 0.60 EFB2_01660 Cytochrome c-type biogenesis protein CcmF low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.58 GFF4877 Cytochrome c heme lyase subunit CcmF — —
Rahnella sp. WP5 0.35 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.67 EX31_RS19745 heme lyase CcmF/NrfE family subunit low > 89
Pantoea sp. MT58 0.35 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.65 IAI47_06090 heme lyase CcmF/NrfE family subunit low > 76
Shewanella loihica PV-4 0.32 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.51 Shew_0193 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 60
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Shewanella sp. ANA-3 0.30 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) 0.50 Shewana3_0234 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 73
Pseudomonas sp. RS175 0.30 PFR28_03623 Ribosomal RNA small subunit methyltransferase C 0.52 PFR28_00870 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas simiae WCS417 0.29 PS417_04525 16S rRNA methyltransferase 0.52 PS417_08715 cytochrome C biogenesis protein CcmF — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit low > 109
Shewanella oneidensis MR-1 0.29 SO0828 conserved hypothetical protein (NCBI ptt file) 0.49 SO0266 ccmF-1 cytochrome c-type biogenesis protein CcmF (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.51 Pf6N2E2_2555 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_06940 16S rRNA methyltransferase 0.52 AO356_03635 cytochrome C biogenesis protein CcmF — —
Shewanella amazonensis SB2B 0.29 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.51 Sama_0248 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 62
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.53 PfGW456L13_4311 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas sp. S08-1 0.29 OH686_06345 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.51 OH686_02635 cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.51 Pf1N1B4_3644 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_14995 16S rRNA methyltransferase 0.51 AO353_18875 cytochrome C biogenesis protein CcmF — —
Pseudomonas putida KT2440 0.27 PP_0761 Ribosomal RNA small subunit methyltransferase C 0.50 PP_4322 holocytochrome c synthetase — —
Rhizobium sp. OAE497 0.13 ABIE40_RS00360 class I SAM-dependent methyltransferase 0.43 ABIE40_RS05685 heme lyase CcmF/NrfE family subunit low > 107

Not shown: 8 genomes with orthologs for CSW01_03280 only; 27 genomes with orthologs for CSW01_10265 only