Conservation of cofitness between CSW01_03330 and CSW01_08525 in Vibrio cholerae E7946 ATCC 55056

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03330 transcription elongation factor GreA 1.0 CSW01_08525 formate transporter FocA 0.49 12
Escherichia coli ECOR27 0.68 NOLOHH_09845 greA transcription elongation factor GreA 0.56 NOLOHH_22065 focA formate transporter FocA low > 75
Escherichia coli ECRC62 0.68 BNILDI_01690 greA transcription elongation factor GreA 0.56 BNILDI_20320 focA formate transporter FocA low > 75
Escherichia coli ECRC102 0.68 NIAGMN_15805 greA transcription elongation factor GreA 0.56 NIAGMN_03225 focA formate transporter FocA — —
Escherichia coli BW25113 0.68 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.56 b0904 focA formate transporter (NCBI) low > 76
Escherichia coli ECRC101 0.68 MCAODC_08565 greA transcription elongation factor GreA 0.56 MCAODC_24895 focA formate transporter FocA low > 87
Escherichia coli Nissle 1917 0.68 ECOLIN_RS18320 transcription elongation factor GreA 0.56 ECOLIN_RS04790 formate transporter FocA — —
Escherichia coli BL21 0.68 ECD_03046 transcript cleavage factor 0.56 ECD_00908 formate channel low > 61
Escherichia coli ECRC98 0.68 JDDGAC_21670 greA transcription elongation factor GreA 0.56 JDDGAC_09115 focA formate transporter FocA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_00519 Transcription elongation factor GreA 0.56 OHPLBJKB_02764 putative formate transporter 1 low > 73
Escherichia coli ECRC99 0.68 KEDOAH_10105 greA transcription elongation factor GreA 0.56 KEDOAH_22230 focA formate transporter FocA — —
Escherichia coli ECRC100 0.68 OKFHMN_18045 greA transcription elongation factor GreA 0.56 OKFHMN_05505 focA formate transporter FocA low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF2922 Transcription elongation factor GreA 0.54 GFF3661 Formate efflux transporter (TC 2.A.44 family) low > 78
Alteromonas macleodii MIT1002 0.67 MIT1002_01468 Transcript cleavage factor GreA 0.16 MIT1002_01529 Formate channel 1 low > 70
Enterobacter sp. TBS_079 0.66 MPMX20_04085 Transcription elongation factor GreA 0.54 MPMX20_01563 putative formate transporter 1 low > 85
Klebsiella michiganensis M5al 0.66 BWI76_RS25160 transcription elongation factor GreA 0.56 BWI76_RS09740 formate transporter FocA low > 92
Dickeya dadantii 3937 0.66 DDA3937_RS03015 transcription elongation factor GreA 0.55 DDA3937_RS09660 formate transporter FocA — —
Pectobacterium carotovorum WPP14 0.65 HER17_RS18330 transcription elongation factor GreA 0.52 HER17_RS12300 formate transporter FocA — —
Dickeya dianthicola ME23 0.65 DZA65_RS03180 transcription elongation factor GreA 0.53 DZA65_RS09980 formate transporter FocA low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS03185 transcription elongation factor GreA 0.53 HGI48_RS09670 formate transporter FocA low > 71
Rahnella sp. WP5 0.64 EX31_RS08595 transcription elongation factor GreA 0.55 EX31_RS18265 formate transporter FocA low > 89
Pantoea sp. MT58 0.64 IAI47_17080 transcription elongation factor GreA 0.52 IAI47_12875 formate transporter FocA low > 76
Serratia liquefaciens MT49 0.63 IAI46_01880 transcription elongation factor GreA 0.54 IAI46_08615 formate transporter FocA low > 86
Pseudomonas stutzeri RCH2 0.61 Psest_0969 transcription elongation factor GreA 0.14 Psest_2408 Formate/nitrite family of transporters low > 67
Pseudomonas sp. RS175 0.59 PFR28_00078 Transcription elongation factor GreA 0.11 PFR28_04199 Inner membrane protein YfdC — —
Pseudomonas sp. S08-1 0.58 OH686_17085 Transcription elongation factor GreA 0.15 OH686_20565 Nitrite transporter from formate/nitrite family low > 80
Marinobacter adhaerens HP15 0.58 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain 0.14 HP15_3885 formate and nitrite transporter low > 73
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_07475 transcription elongation factor GreA 0.10 AO356_13620 hypothetical protein — —
Erwinia tracheiphila SCR3 0.58 LU632_RS21165 greA transcription elongation factor GreA 0.52 LU632_RS09780 focA formate transporter FocA low > 74
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_4190 transcription elongation factor GreA 0.25 Psyr_4660 Formate/nitrite transporter — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_4190 transcription elongation factor GreA 0.25 Psyr_4660 Formate/nitrite transporter — —
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_5098 Transcription elongation factor GreA 0.10 PfGW456L13_1053 Putative transport — —
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_1171 Transcription elongation factor GreA 0.09 Pf1N1B4_2387 Putative transport — —
Pseudomonas sp. SVBP6 0.55 COO64_RS15235 greA transcription elongation factor GreA 0.11 COO64_RS17220 formate/nitrite transporter family protein low > 93
Pseudomonas sp. DMC3 0.55 GFF4978 Transcription elongation factor GreA 0.11 GFF168 Inner membrane protein YfdC low > 89
Methylophilus sp. DMC18 0.53 GFF313 Transcription elongation factor GreA 0.16 GFF213 putative formate transporter 1 low > 43
Bosea sp. OAE506 0.50 ABIE41_RS11905 transcription elongation factor GreA 0.27 ABIE41_RS15280 formate/nitrite transporter family protein — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS15540 transcription elongation factor GreA 0.18 ABCV34_RS06885 formate/nitrite transporter family protein low > 48
Rhodospirillum rubrum S1H 0.49 Rru_A2887 GreA/GreB family elongation factor (NCBI) 0.33 Rru_A0311 Formate/nitrite transporter (NCBI) low > 58
Variovorax sp. OAS795 0.47 ABID97_RS17070 transcription elongation factor GreA 0.14 ABID97_RS16035 formate/nitrite transporter family protein low > 91
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_03870 transcription elongation factor GreA 0.09 CA264_20810 transporter low > 74

Not shown: 66 genomes with orthologs for CSW01_03330 only; 3 genomes with orthologs for CSW01_08525 only