Conservation of cofitness between CSW01_07545 and CSW01_04820 in Vibrio cholerae E7946 ATCC 55056

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 CSW01_04820 serine hydroxymethyltransferase 0.71 18
Escherichia coli ECRC101 0.55 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 MCAODC_12040 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC102 0.54 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 NIAGMN_19280 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC98 0.54 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 JDDGAC_25175 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC100 0.54 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 OKFHMN_21510 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC99 0.54 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 KEDOAH_06710 glyA serine hydroxymethyltransferase — —
Escherichia coli ECOR38 0.54 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 HEPCGN_20655 glyA serine hydroxymethyltransferase low > 88
Escherichia coli ECRC62 0.54 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 BNILDI_11985 glyA serine hydroxymethyltransferase low > 75
Escherichia coli ECOR27 0.54 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 NOLOHH_13185 glyA serine hydroxymethyltransferase — —
Escherichia coli BL21 0.54 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.79 ECD_02443 serine hydroxymethyltransferase — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 ECOLIN_RS14440 serine hydroxymethyltransferase — —
Escherichia coli BW25113 0.54 b1835 yebU putative nucleolar proteins (VIMSS) 0.79 b2551 glyA serine hydroxymethyltransferase (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.79 OHPLBJKB_01156 Serine hydroxymethyltransferase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.79 GFF2447 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Escherichia fergusonii Becca 0.54 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.79 EFB2_01345 Serine hydroxymethyltransferase — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.79 EX28DRAFT_0099 Glycine/serine hydroxymethyltransferase — —
Pantoea sp. MT58 0.53 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.81 IAI47_04960 serine hydroxymethyltransferase — —
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS02510 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.81 PagCFBP13505_RS14850 serine hydroxymethyltransferase — —
Serratia liquefaciens MT49 0.52 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.81 IAI46_19395 serine hydroxymethyltransferase — —
Enterobacter sp. TBS_079 0.52 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.79 MPMX20_03420 Serine hydroxymethyltransferase — —
Dickeya dadantii 3937 0.51 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.81 DDA3937_RS15600 serine hydroxymethyltransferase — —
Dickeya dianthicola 67-19 0.51 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.81 HGI48_RS15700 serine hydroxymethyltransferase — —
Pectobacterium carotovorum WPP14 0.51 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.81 HER17_RS05950 serine hydroxymethyltransferase — —
Klebsiella michiganensis M5al 0.51 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 BWI76_RS21225 serine hydroxymethyltransferase — —
Erwinia amylovora T8 0.51 OLJFJH_12985 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 OLJFJH_10340 Serine hydroxymethyltransferase — —
Dickeya dianthicola ME23 0.51 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.81 DZA65_RS16775 serine hydroxymethyltransferase — —
Klebsiella pneumoniae MKP103 0.50 KDGMDA_25270 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 KDGMDA_28355 Serine hydroxymethyltransferase low > 95
Rahnella sp. WP5 0.50 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.80 EX31_RS20585 serine hydroxymethyltransferase — —
Shewanella oneidensis MR-1 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.83 SO3471 glyA serine hydroxymethyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.50 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.83 Shewana3_1094 glyA serine hydroxymethyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.48 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.81 Shew_1185 glyA serine hydroxymethyltransferase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.44 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.82 Sama_1014 glyA serine hydroxymethyltransferase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase 0.72 B158DRAFT_1908 Glycine/serine hydroxymethyltransferase low > 40
Bacteroides thetaiotaomicron VPI-5482 0.16 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) 0.53 BT0738 serine hydroxymethyltransferase (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_05610 rRNA methyltransferase 0.50 CA264_17045 serine hydroxymethyltransferase low > 74
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase 0.53 HMPREF1181_RS15010 serine hydroxymethyltransferase low > 56
Bacteroides ovatus ATCC 8483 0.15 BACOVA_00671 NOL1/NOP2/sun family protein 0.53 BACOVA_02446 glycine hydroxymethyltransferase low > 96
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1153 tRNA and rRNA cytosine-C5-methylases 0.51 Echvi_1188 Glycine/serine hydroxymethyltransferase 0.31 26
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase 0.53 HMPREF1078_RS02145 serine hydroxymethyltransferase low > 61
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase 0.54 HMPREF1058_RS03800 serine hydroxymethyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS09930 rRNA cytosine-C5-methyltransferase 0.54 ABI39_RS17420 serine hydroxymethyltransferase low > 72
Desulfovibrio vulgaris Miyazaki F 0.11 DvMF_2026 Fmu (Sun) domain protein (RefSeq) 0.57 DvMF_3097 glyA serine hydroxymethyltransferase (RefSeq) — —

Not shown: 1 genomes with orthologs for CSW01_07545 only; 55 genomes with orthologs for CSW01_04820 only