Conservation of cofitness between CSW01_12820 and CSW01_04710 in Vibrio cholerae E7946 ATCC 55056

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12820 ribosome hibernation promoting factor 1.0 CSW01_04710 UDP-N-acetyl-D-mannosamine dehydrogenase 0.47 15
Serratia liquefaciens MT49 0.71 IAI46_22475 ribosome hibernation promoting factor 0.67 IAI46_00605 UDP-N-acetyl-D-mannosamine dehydrogenase low > 87
Pectobacterium carotovorum WPP14 0.69 HER17_RS20065 ribosome hibernation promoting factor 0.66 HER17_RS01160 UDP-N-acetyl-D-mannosamine dehydrogenase low > 75
Klebsiella michiganensis M5al 0.67 BWI76_RS25270 ribosome hibernation promoting factor 0.65 BWI76_RS01095 UDP-N-acetyl-D-mannosamine dehydrogenase low > 92
Marinobacter adhaerens HP15 0.67 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA 0.63 HP15_2381 UDP-glucose 6-dehydrogenase low > 73
Erwinia amylovora T8 0.66 OLJFJH_07065 ribosome hibernation promoting factor 0.66 OLJFJH_06295 UDP-N-acetyl-D-mannosamine dehydrogenase low > 58
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_2079 ribosomal subunit interface protein 0.65 B158DRAFT_2353 nucleotide sugar dehydrogenase low > 40
Rahnella sp. WP5 0.66 EX31_RS12395 ribosome hibernation promoting factor 0.65 EX31_RS15070 UDP-N-acetyl-D-mannosamine dehydrogenase low > 89
Klebsiella pneumoniae MRSN742743 0.66 GJGHJB_00495 hpf ribosome hibernation promoting factor 0.65 GJGHJB_04851 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 83
Klebsiella pneumoniae MKP103 0.66 KDGMDA_06085 ribosome hibernation promoting factor 0.65 KDGMDA_09575 UDP-N-acetyl-D-mannosamine dehydrogenase low > 94
Enterobacter sp. TBS_079 0.65 MPMX20_04109 Ribosome hibernation promoting factor 0.67 MPMX20_04486 UDP-N-acetyl-D-mannosamine dehydrogenase low > 85
Erwinia tracheiphila HP pepo 2.2 0.65 IJEDHG_13735 hpf ribosome hibernation promoting factor 0.63 IJEDHG_08885 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 61
Dickeya dianthicola ME23 0.64 DZA65_RS01505 ribosome hibernation promoting factor 0.60 DZA65_RS21240 UDP-N-acetyl-D-mannosamine dehydrogenase low > 75
Erwinia tracheiphila SCR3 0.64 LU632_RS21285 hpf ribosome hibernation promoting factor 0.63 LU632_RS24235 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 73
Dickeya dianthicola 67-19 0.64 HGI48_RS01440 ribosome hibernation promoting factor 0.60 HGI48_RS20195 UDP-N-acetyl-D-mannosamine dehydrogenase low > 71
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13516_RS17480 hpf ribosome hibernation promoting factor 0.64 PagCFBP13516_RS18775 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 80
Pantoea sp. MT58 0.64 IAI47_17190 ribosome hibernation promoting factor 0.65 IAI47_18505 UDP-N-acetyl-D-mannosamine dehydrogenase low > 76
Enterobacter asburiae PDN3 0.63 EX28DRAFT_3257 ribosomal subunit interface protein 0.68 EX28DRAFT_4457 nucleotide sugar dehydrogenase low > 76
Dickeya dadantii 3937 0.63 DDA3937_RS01525 ribosome hibernation promoting factor 0.61 DDA3937_RS20050 UDP-N-acetyl-D-mannosamine dehydrogenase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF2947 Ribosome hibernation protein YhbH 0.64 GFF2886 UDP-glucose dehydrogenase (EC 1.1.1.22) low > 78
Escherichia coli BW25113 0.62 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) 0.66 b3787 rffD UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_00497 Ribosome hibernation promoting factor 0.66 OHPLBJKB_04267 UDP-N-acetyl-D-mannosamine dehydrogenase low > 74
Escherichia fergusonii Becca 0.62 EFB2_00620 Ribosome hibernation promoting factor 0.65 EFB2_04852 UDP-N-acetyl-D-mannosamine dehydrogenase low > 86
Escherichia coli ECRC62 0.62 BNILDI_01800 Ribosome hibernation promoting factor 0.66 BNILDI_04825 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 0.81 53
Escherichia coli ECRC102 0.62 NIAGMN_15695 Ribosome hibernation promoting factor 0.66 NIAGMN_12320 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 80
Escherichia coli ECRC101 0.62 MCAODC_08455 Ribosome hibernation promoting factor 0.66 MCAODC_05070 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 87
Escherichia coli ECOR38 0.62 HEPCGN_16810 Ribosome hibernation promoting factor 0.66 HEPCGN_13275 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 88
Escherichia coli BL21 0.62 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers 0.66 ECD_03665 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase low > 61
Escherichia coli ECOR27 0.62 NOLOHH_09735 Ribosome hibernation promoting factor 0.66 NOLOHH_06700 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 75
Escherichia coli ECRC99 0.62 KEDOAH_10215 Ribosome hibernation promoting factor 0.66 KEDOAH_13585 wecC UDP-N-acetyl-D-mannosamine dehydrogenase — —
Escherichia coli ECRC98 0.62 JDDGAC_21560 Ribosome hibernation promoting factor 0.66 JDDGAC_18190 wecC UDP-N-acetyl-D-mannosamine dehydrogenase 0.78 1
Escherichia coli ECRC100 0.62 OKFHMN_17935 Ribosome hibernation promoting factor 0.66 OKFHMN_14565 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 79
Escherichia coli Nissle 1917 0.62 ECOLIN_RS18430 ribosome hibernation promoting factor 0.66 ECOLIN_RS21740 UDP-N-acetyl-D-mannosamine dehydrogenase low > 55
Pseudomonas sp. S08-1 0.59 OH686_08550 Ribosome hibernation promoting factor Hpf 0.73 OH686_14390 UDP-N-acetyl-D-mannosamine dehydrogenase low > 80
Pseudomonas aeruginosa PA14 0.58 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein 0.67 IKLFDK_16050 UDP-N-acetyl-D-mannosamine dehydrogenase low > 98
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_5015 Ribosome hibernation protein YhbH 0.69 PfGW456L13_3996 UDP-glucose dehydrogenase (EC 1.1.1.22) low > 87
Pseudomonas lactucae CFBP13502 0.54 GEMAOFIL_01074 Ribosome hibernation promoting factor 0.70 GEMAOFIL_01777 UDP-N-acetyl-D-mannosamine dehydrogenase low > 96
Pseudomonas sp. RS175 0.54 PFR28_00172 Ribosome hibernation promoting factor 0.70 PFR28_00917 UDP-N-acetyl-D-mannosamine dehydrogenase 0.23 33
Ralstonia solanacearum PSI07 0.39 RPSI07_RS22135 ribosomal subunit interface protein 0.70 RPSI07_RS04505 UDP-N-acetyl-D-mannosamine dehydrogenase low > 81
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA 0.69 QEN71_RS40735 UDP-N-acetyl-D-mannosamine dehydrogenase low > 153
Ralstonia solanacearum GMI1000 0.38 RS_RS02015 ribosomal subunit interface protein 0.70 RS_RS22025 UDP-N-acetyl-D-mannosamine dehydrogenase low > 80
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS11165 ribosomal subunit interface protein 0.69 RALBFv3_RS19095 UDP-N-acetyl-D-mannosamine dehydrogenase low > 76
Ralstonia solanacearum UW163 0.38 UW163_RS02415 ribosomal subunit interface protein 0.69 UW163_RS20035 UDP-N-acetyl-D-mannosamine dehydrogenase — —
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS02900 ribosome hibernation promoting factor 0.70 BPHYT_RS29845 UDP-N-acetyl-D-mannosamine dehydrogenase — —
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS10880 ribosome-associated translation inhibitor RaiA 0.51 HMPREF1078_RS16035 UDP-N-acetyl-D-mannosamine dehydrogenase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.25 BT2741 sigma-54 modulation protein (NCBI ptt file) 0.51 BT2945 UDP-N-acetyl-D-mannosamine dehydrogenase (NCBI ptt file) low > 81

Not shown: 51 genomes with orthologs for CSW01_12820 only; 6 genomes with orthologs for CSW01_04710 only