Conservation of cofitness between CSW01_06870 and CSW01_03995 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06870 7-carboxy-7-deazaguanine synthase QueE 1.0 CSW01_03995 hypothetical protein 0.48 3
Dickeya dadantii 3937 0.60 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE 0.61 DDA3937_RS18375 acetate uptake transporter low > 74
Shewanella oneidensis MR-1 0.60 SO2501 radical activating enzyme (NCBI ptt file) 0.82 SO3588 gpr1/fun34/yaaH family protein (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.59 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE 0.60 HER17_RS02835 acetate uptake transporter low > 75
Shewanella sp. ANA-3 0.59 Shewana3_2163 radical activating enzyme (RefSeq) 0.82 Shewana3_3180 GPR1/FUN34/yaaH family protein (RefSeq) low > 73
Rahnella sp. WP5 0.58 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE 0.61 EX31_RS03905 acetate uptake transporter low > 89
Serratia liquefaciens MT49 0.58 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE 0.54 IAI46_03070 acetate uptake transporter low > 87
Erwinia tracheiphila SCR3 0.57 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE 0.55 LU632_RS02650 satP acetate uptake transporter low > 73
Escherichia coli ECOR27 0.57 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE 0.57 NOLOHH_03400 satP acetate uptake transporter low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF4831 Queuosine Biosynthesis QueE Radical SAM 0.59 GFF1085 YaaH protein low > 78
Escherichia coli BW25113 0.57 b2777 ygcF hypothetical protein (NCBI) 0.57 b0010 yaaH conserved inner membrane protein associated with acetate transport (NCBI) low > 76
Escherichia coli ECOR38 0.57 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE 0.57 HEPCGN_09070 satP acetate uptake transporter low > 88
Escherichia coli ECRC101 0.57 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE 0.57 MCAODC_01585 satP acetate uptake transporter low > 87
Escherichia coli BL21 0.57 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis 0.57 ECD_00010 succinate-acetate transporter low > 61
Escherichia coli ECRC99 0.57 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE 0.57 KEDOAH_17085 satP acetate uptake transporter — —
Erwinia tracheiphila HP pepo 2.2 0.57 IJEDHG_17410 queE 7-carboxy-7-deazaguanine synthase QueE 0.55 IJEDHG_06260 satP Acetate uptake transporter low > 61
Escherichia coli ECRC98 0.57 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE 0.57 JDDGAC_14665 satP acetate uptake transporter low > 87
Escherichia coli ECRC100 0.57 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE 0.57 OKFHMN_11070 satP acetate uptake transporter low > 79
Escherichia fergusonii Becca 0.57 EFB2_01141 7-carboxy-7-deazaguanine synthase 0.57 EFB2_04033 Succinate-acetate/proton symporter SatP low > 86
Escherichia coli Nissle 1917 0.57 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE 0.57 ECOLIN_RS00060 acetate uptake transporter low > 55
Escherichia coli ECRC102 0.57 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE 0.57 NIAGMN_08920 satP acetate uptake transporter low > 80
Escherichia coli ECRC62 0.57 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE 0.57 BNILDI_08205 satP acetate uptake transporter low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase 0.57 OHPLBJKB_03650 Succinate-acetate/proton symporter SatP low > 74
Shewanella loihica PV-4 0.56 Shew_2061 radical SAM domain-containing protein (RefSeq) 0.82 Shew_0904 GPR1/FUN34/yaaH family protein (RefSeq) low > 60
Dickeya dianthicola 67-19 0.56 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE 0.60 HGI48_RS18310 acetate uptake transporter low > 71
Dickeya dianthicola ME23 0.56 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE 0.60 DZA65_RS19450 acetate uptake transporter low > 75
Enterobacter sp. TBS_079 0.56 MPMX20_03645 7-carboxy-7-deazaguanine synthase 0.58 MPMX20_00719 Succinate-acetate/proton symporter SatP 0.19 54
Pantoea sp. MT58 0.56 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE 0.50 IAI47_16180 acetate uptake transporter low > 76
Klebsiella michiganensis M5al 0.56 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE 0.57 BWI76_RS04285 hypothetical protein low > 92
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 0.56 EX28DRAFT_3623 Predicted membrane protein low > 76
Klebsiella pneumoniae MKP103 0.56 KDGMDA_03310 7-carboxy-7-deazaguanine synthase QueE 0.56 KDGMDA_12555 acetate uptake transporter low > 95
Pantoea agglomerans CFBP13505 P0401 0.55 PagCFBP13505_RS16825 7-carboxy-7-deazaguanine synthase QueE 0.50 PagCFBP13505_RS21925 acetate uptake transporter low > 74
Shewanella amazonensis SB2B 0.55 Sama_1825 radical activating enzyme (RefSeq) 0.78 Sama_0695 gpr1/fun34/YaaH family protein (RefSeq) low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.22 ABZR88_RS09380 7-carboxy-7-deazaguanine synthase QueE 0.51 ABZR88_RS10105 GPR1/FUN34/YaaH family transporter low > 71
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_1124 radical SAM domain protein (RefSeq) 0.68 DvMF_2076 GPR1/FUN34/yaaH family protein (RefSeq) low > 51
Burkholderia phytofirmans PsJN 0.16 BPHYT_RS01505 7-cyano-7-deazaguanine reductase 0.37 BPHYT_RS27785 hypothetical protein low > 109
Desulfovibrio vulgaris Hildenborough JW710 0.15 DVU2658 conserved hypothetical protein (TIGR) 0.60 DVU2789 Gpr1/Fun34/YaaH family protein (TIGR) low > 55

Not shown: 62 genomes with orthologs for CSW01_06870 only; 2 genomes with orthologs for CSW01_03995 only