| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07225 | | cytochrome-c oxidase, cbb3-type subunit II | 1.0 | CSW01_03785 | | phosphate ABC transporter permease | 0.42 | 13 |
| Alteromonas macleodii MIT1002 | 0.77 | MIT1002_02130 | | cbb3-type cytochrome c oxidase subunit II | 0.19 | MIT1002_00874 | | Phosphate transport system permease protein PstC | low | > 70 |
| Shewanella amazonensis SB2B | 0.76 | Sama_1792 | | cytochrome c oxidase, cbb3-type, subunit II (RefSeq) | 0.40 | Sama_1408 | | phosphate ABC transporter, permease protein, putative (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.74 | SO2363 | ccoO | cytochrome c oxidase, cbb3-type, subunit II (NCBI ptt file) | 0.37 | SO1723 | | phosphate ABC transporter, permease protein, putative (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.74 | Shew_1986 | | cytochrome c oxidase, cbb3-type, subunit II (RefSeq) | 0.39 | Shew_1698 | | binding-protein-dependent transport systems inner membrane component (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.74 | Shewana3_2108 | | cytochrome c oxidase, cbb3-type, subunit II (RefSeq) | 0.38 | Shewana3_2734 | | binding-protein-dependent transport systems inner membrane component (RefSeq) | — | — |
| Pseudomonas aeruginosa PA14 | 0.71 | IKLFDK_07425 | | cytochrome-c oxidase cbb3-type subunit II | 0.36 | IKLFDK_26615 | | phosphate ABC transporter permease | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.71 | DY961_RS19400 | ccoO;go_function=cytochrome-c | cytochrome-c oxidase cbb3-type subunit II | 0.34 | DY961_RS12735 | | ABC transporter permease subunit | 0.32 | 76 |
| Pseudomonas aeruginosa PUPa3 | 0.71 | DQ20_RS53525 | ccoO;go_function=cytochrome-c | cytochrome-c oxidase cbb3-type subunit II | 0.34 | DQ20_RS49395 | | ABC transporter permease subunit | — | — |
| Pseudomonas stutzeri RCH2 | 0.70 | Psest_2528 | | cytochrome c oxidase, cbb3-type, subunit II | 0.39 | Psest_0220 | | ABC-type uncharacterized transport system, permease component | — | — |
| Kangiella aquimarina DSM 16071 | 0.70 | B158DRAFT_1967 | | cytochrome c oxidase, cbb3-type, subunit II | 0.37 | B158DRAFT_0891 | | ABC-type uncharacterized transport system, permease component | low | > 40 |
| Pseudomonas sp. S08-1 | 0.69 | OH686_02195 | | cytochrome c oxidase, cbb3-type, subunit II | 0.38 | OH686_13415 | | Phosphate ABC transporter, permease protein PstC | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.69 | AO353_00590 | | cytochrome C oxidase Cbb3 | 0.34 | AO353_09900 | | phosphate ABC transporter permease | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.69 | COO64_RS18685 | ccoO | cytochrome-c oxidase, cbb3-type subunit II | 0.34 | COO64_RS01710 | | ABC transporter permease subunit | low | > 93 |
| Pseudomonas putida KT2440 | 0.69 | PP_4251 | | cytochrome c oxidase subunit, cbb3-type | 0.34 | PP_5328 | | putative phosphate transport system permease protein | low | > 96 |
| Pseudomonas sp. BP01 | 0.69 | JOY50_RS00060 | ccoO | cytochrome-c oxidase, cbb3-type subunit II | 0.35 | JOY50_RS08860 | | ABC transporter permease subunit | low | > 84 |
| Pseudomonas segetis P6 | 0.69 | MPMX49_02313 | | hypothetical protein | 0.38 | MPMX49_00123 | | hypothetical protein | — | — |
| Pseudomonas sp. DMC3 | 0.68 | GFF728 | | hypothetical protein | 0.34 | GFF478 | | hypothetical protein | 0.68 | 50 |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_2311 | | Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) | 0.34 | Pf6N2E2_4074 | | Phosphate transport system permease protein PstC (TC 3.A.1.7.1) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.68 | AO356_02430 | | cytochrome C oxidase Cbb3 | 0.34 | AO356_11040 | | phosphate ABC transporter permease | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_4062 | | Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) | 0.34 | PfGW456L13_754 | | Phosphate transport system permease protein PstC (TC 3.A.1.7.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.67 | Pf1N1B4_3878 | | Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) | 0.34 | Pf1N1B4_2035 | | Phosphate transport system permease protein PstC (TC 3.A.1.7.1) | low | > 87 |
| Pseudomonas sp. RS175 | 0.67 | PFR28_01090 | | hypothetical protein | 0.34 | PFR28_04488 | | hypothetical protein | low | > 88 |
| Pseudomonas orientalis W4I3 | 0.66 | QF045_RS22540 | | cytochrome-c oxidase, cbb3-type subunit II | 0.32 | QF045_RS02435 | | ABC transporter permease subunit | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.66 | PFLU_RS22345 | | cytochrome-c oxidase, cbb3-type subunit II | 0.34 | PFLU_RS29765 | | ABC transporter permease subunit | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.66 | PFLU_RS22345 | | cytochrome-c oxidase, cbb3-type subunit II | 0.34 | PFLU_RS29765 | | ABC transporter permease subunit | low | > 109 |
| Pseudomonas simiae WCS417 | 0.66 | PS417_20725 | | cbb3-type cytochrome c oxidase subunit II | 0.34 | PS417_28080 | | phosphate ABC transporter permease | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.66 | GEMAOFIL_04290 | | hypothetical protein | 0.34 | GEMAOFIL_00082 | | hypothetical protein | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.62 | Psyr_3414 | | Cytochrome C oxidase, mono-heme subunit/FixO | 0.35 | Psyr_5040 | | Binding-protein-dependent transport systems inner membrane component | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.62 | Psyr_3414 | | Cytochrome C oxidase, mono-heme subunit/FixO | 0.35 | Psyr_5040 | | Binding-protein-dependent transport systems inner membrane component | — | — |
Not shown: 36 genomes with orthologs for CSW01_07225 only; 8 genomes with orthologs for CSW01_03785 only