Conservation of cofitness between CSW01_07545 and CSW01_02450 in Vibrio cholerae E7946 ATCC 55056

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 CSW01_02450 pyrroline-5-carboxylate reductase 0.72 6
Escherichia coli ECRC101 0.55 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 MCAODC_27835 proC pyrroline-5-carboxylate reductase low > 88
Escherichia coli ECRC98 0.54 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 JDDGAC_12265 proC pyrroline-5-carboxylate reductase low > 87
Escherichia coli ECRC100 0.54 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 OKFHMN_08610 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECRC99 0.54 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 KEDOAH_19355 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECRC102 0.54 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 NIAGMN_06665 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECOR38 0.54 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 HEPCGN_07250 proC pyrroline-5-carboxylate reductase low > 88
Escherichia coli ECRC62 0.54 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 BNILDI_22950 proC pyrroline-5-carboxylate reductase low > 75
Escherichia coli ECOR27 0.54 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 NOLOHH_01535 proC pyrroline-5-carboxylate reductase — —
Escherichia coli BL21 0.54 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.27 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 ECOLIN_RS02345 pyrroline-5-carboxylate reductase — —
Escherichia coli BW25113 0.54 b1835 yebU putative nucleolar proteins (VIMSS) 0.27 b0386 proC pyrroline-5-carboxylate reductase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.27 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.26 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 78
Escherichia fergusonii Becca 0.54 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.27 EFB2_03670 Pyrroline-5-carboxylate reductase low > 86
Pantoea sp. MT58 0.53 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.26 IAI47_14945 pyrroline-5-carboxylate reductase low > 76
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.27 EX28DRAFT_2585 pyrroline-5-carboxylate reductase low > 76
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS02510 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.26 PagCFBP13505_RS10205 pyrroline-5-carboxylate reductase low > 74
Serratia liquefaciens MT49 0.52 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.69 IAI46_21415 pyrroline-5-carboxylate reductase low > 86
Enterobacter sp. TBS_079 0.52 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.27 MPMX20_00976 Pyrroline-5-carboxylate reductase low > 85
Dickeya dadantii 3937 0.51 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.68 DDA3937_RS17305 pyrroline-5-carboxylate reductase low > 74
Dickeya dianthicola 67-19 0.51 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.68 HGI48_RS17350 pyrroline-5-carboxylate reductase — —
Pectobacterium carotovorum WPP14 0.51 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.69 HER17_RS03805 pyrroline-5-carboxylate reductase — —
Klebsiella michiganensis M5al 0.51 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 BWI76_RS06170 pyrroline-5-carboxylate reductase — —
Erwinia amylovora T8 0.51 OLJFJH_12985 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.26 OLJFJH_18285 pyrroline-5-carboxylate reductase — —
Dickeya dianthicola ME23 0.51 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.67 DZA65_RS18440 pyrroline-5-carboxylate reductase — —
Rahnella sp. WP5 0.50 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 EX31_RS02690 pyrroline-5-carboxylate reductase low > 89
Klebsiella pneumoniae MKP103 0.50 KDGMDA_25270 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.27 KDGMDA_14250 pyrroline-5-carboxylate reductase low > 95
Shewanella sp. ANA-3 0.50 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.56 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.57 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.48 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.52 Shew_1136 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 60
Shewanella amazonensis SB2B 0.44 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.50 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase 0.42 B158DRAFT_0197 pyrroline-5-carboxylate reductase low > 40
Bacteroides thetaiotaomicron VPI-5482 0.16 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) 0.19 BT3757 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_05610 rRNA methyltransferase 0.16 CA264_07730 pyrroline-5-carboxylate reductase low > 74
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase 0.15 HMPREF1181_RS03440 pyrroline-5-carboxylate reductase low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS00225 RNA methyltransferase 0.18 ABZR88_RS09865 pyrroline-5-carboxylate reductase low > 71
Bacteroides ovatus ATCC 8483 0.15 BACOVA_00671 NOL1/NOP2/sun family protein 0.21 BACOVA_03587 pyrroline-5-carboxylate reductase low > 96
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1153 tRNA and rRNA cytosine-C5-methylases 0.23 Echvi_2635 pyrroline-5-carboxylate reductase 0.33 15
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase 0.15 HMPREF1078_RS10620 pyrroline-5-carboxylate reductase low > 61
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase 0.15 HMPREF1058_RS08830 pyrroline-5-carboxylate reductase low > 67
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS09930 rRNA cytosine-C5-methyltransferase 0.15 ABI39_RS02960 pyrroline-5-carboxylate reductase low > 72
Desulfovibrio vulgaris Miyazaki F 0.11 DvMF_2026 Fmu (Sun) domain protein (RefSeq) 0.21 DvMF_3161 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 51

Not shown: 0 genomes with orthologs for CSW01_07545 only; 75 genomes with orthologs for CSW01_02450 only