Conservation of cofitness between BWI76_RS00940 and BWI76_RS04080 in Klebsiella michiganensis M5al

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Klebsiella michiganensis M5al 1.0 BWI76_RS00940 transcriptional regulator HdfR 1.0 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.39 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF2907 HTH-type transcriptional regulator hdfR 0.91 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 78
Escherichia coli BL21 0.83 ECD_03642 flhDC operon transcriptional repressor 0.92 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent low > 61
Escherichia coli BW25113 0.83 b4480 hdfR transcriptional regulator HdfR (NCBI) 0.92 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_04288 HTH-type transcriptional regulator HdfR 0.91 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C low > 73
Escherichia coli ECOR38 0.82 HEPCGN_13385 hdfR HTH-type transcriptional regulator HdfR 0.91 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Escherichia fergusonii Becca 0.82 EFB2_04871 HTH-type transcriptional regulator HdfR 0.91 EFB2_04076 Ribosomal RNA small subunit methyltransferase C low > 86
Escherichia coli Nissle 1917 0.82 ECOLIN_RS21630 HTH-type transcriptional regulator HdfR 0.92 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 55
Escherichia coli ECRC98 0.82 JDDGAC_18295 hdfR HTH-type transcriptional regulator HdfR 0.91 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.89 65
Escherichia coli ECRC99 0.82 KEDOAH_13475 hdfR HTH-type transcriptional regulator HdfR 0.91 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECRC102 0.82 NIAGMN_12430 hdfR HTH-type transcriptional regulator HdfR 0.91 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECOR27 0.82 NOLOHH_06810 hdfR HTH-type transcriptional regulator HdfR 0.91 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Escherichia coli ECRC62 0.82 BNILDI_04715 hdfR HTH-type transcriptional regulator HdfR 0.91 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Escherichia coli ECRC101 0.82 MCAODC_05180 hdfR HTH-type transcriptional regulator HdfR 0.91 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Escherichia coli ECRC100 0.82 OKFHMN_14675 hdfR HTH-type transcriptional regulator HdfR 0.91 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.64 31
Enterobacter sp. TBS_079 0.82 MPMX20_04505 HTH-type transcriptional regulator HdfR 0.90 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C low > 85
Enterobacter asburiae PDN3 0.81 EX28DRAFT_4436 Transcriptional regulator 0.90 EX28DRAFT_3579 16S RNA G1207 methylase RsmC low > 76
Pantoea sp. MT58 0.64 IAI47_01000 HTH-type transcriptional regulator HdfR 0.77 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 76
Pectobacterium carotovorum WPP14 0.64 HER17_RS01040 HTH-type transcriptional regulator HdfR 0.70 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Erwinia tracheiphila SCR3 0.64 LU632_RS24450 hdfR HTH-type transcriptional regulator HdfR 0.75 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Serratia liquefaciens MT49 0.63 IAI46_24385 HTH-type transcriptional regulator HdfR 0.72 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 86
Dickeya dadantii 3937 0.62 DDA3937_RS20190 HTH-type transcriptional regulator HdfR 0.69 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Rahnella sp. WP5 0.62 EX31_RS14970 HTH-type transcriptional regulator HdfR 0.69 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 89
Dickeya dianthicola 67-19 0.62 HGI48_RS20335 HTH-type transcriptional regulator HdfR 0.71 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.72 54
Dickeya dianthicola ME23 0.62 DZA65_RS21375 HTH-type transcriptional regulator HdfR 0.70 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Shewanella oneidensis MR-1 0.33 SO2202 transcriptional regulator, LysR family (NCBI ptt file) 0.27 SO0828 conserved hypothetical protein (NCBI ptt file) 0.31 23
Shewanella sp. ANA-3 0.33 Shewana3_2403 LysR family transcriptional regulator (RefSeq) 0.28 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_19195 LysR family transcriptional regulator 0.38 CSW01_03280 16S rRNA methyltransferase low > 62
Shewanella loihica PV-4 0.26 Shew_2897 LysR family transcriptional regulator (RefSeq) 0.27 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 60
Pseudomonas fluorescens SBW25 0.19 PFLU_RS19485 LysR family transcriptional regulator 0.26 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.19 PFLU_RS19485 LysR family transcriptional regulator 0.26 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Pseudomonas simiae WCS417 0.19 PS417_17700 LysR family transcriptional regulator 0.26 PS417_04525 16S rRNA methyltransferase low > 88
Pseudomonas stutzeri RCH2 0.18 Psest_0802 Transcriptional regulator 0.30 Psest_3224 16S RNA G1207 methylase RsmC low > 67
Pseudomonas fluorescens GW456-L13 0.18 PfGW456L13_2837 HTH-type transcriptional regulator hdfR 0.27 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 87
Pseudomonas fluorescens FW300-N2E3 0.17 AO353_22745 LysR family transcriptional regulator 0.27 AO353_14995 16S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2E2 0.17 Pf6N2E2_2079 HTH-type transcriptional regulator hdfR 0.27 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 103
Pseudomonas fluorescens FW300-N2C3 0.17 AO356_00585 LysR family transcriptional regulator 0.27 AO356_06940 16S rRNA methyltransferase low > 104
Pseudomonas putida KT2440 0.16 PP_2350 LysR family transcriptional regulator 0.27 PP_0761 Ribosomal RNA small subunit methyltransferase C low > 96
Pseudomonas sp. RS175 0.16 PFR28_01360 HTH-type transcriptional regulator HdfR 0.27 PFR28_03623 Ribosomal RNA small subunit methyltransferase C low > 88

Not shown: 6 genomes with orthologs for BWI76_RS00940 only; 8 genomes with orthologs for BWI76_RS04080 only