| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu3136 | | ABC transporter permease | 1.0 | Atu0368 | | tRNA pseudouridine synthase I | 0.25 | 20 |
| Sinorhizobium meliloti 1021 | 0.43 | SM_b21352 | | C4-dicarboxylate small membrane transport protein | 0.74 | SMc01099 | | tRNA pseudouridine synthase A | low | > 103 |
| Bosea sp. OAE506 | 0.39 | ABIE41_RS07825 | | TRAP transporter small permease | 0.47 | ABIE41_RS00165 | | tRNA pseudouridine(38-40) synthase TruA | low | > 77 |
| Caulobacter crescentus NA1000 | 0.34 | CCNA_01514 | | C4-dicarboxylate transport system, small permease component | 0.51 | CCNA_00280 | | tRNA pseudouridine synthase A | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.34 | CCNA_01514 | | C4-dicarboxylate transport system, small permease component | 0.51 | CCNA_00280 | | tRNA pseudouridine synthase A | low | > 67 |
| Azospirillum brasilense Sp245 | 0.31 | AZOBR_RS30125 | | C4-dicarboxylate ABC transporter permease | 0.52 | AZOBR_RS03570 | | tRNA pseudouridine synthase A | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF796 | | TRAP-type C4-dicarboxylate transport system, small permease component | 0.28 | GFF3357 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 90 |
| Azospirillum sp. SherDot2 | 0.30 | MPMX19_05802 | | hypothetical protein | 0.53 | MPMX19_02005 | | tRNA pseudouridine synthase A | — | — |
| Variovorax sp. SCN45 | 0.25 | GFF2919 | | no description | 0.30 | GFF3885 | | tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) | low | > 127 |
| Lysobacter sp. OAE881 | 0.25 | ABIE51_RS02845 | | TRAP transporter small permease | 0.31 | ABIE51_RS08245 | | tRNA pseudouridine(38-40) synthase TruA | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.24 | Xcc-8004.202.1 | | TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter | 0.30 | Xcc-8004.1961.1 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 74 |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_0957 | | Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq) | 0.48 | Dshi_1938 | | tRNA pseudouridine synthase A (RefSeq) | low | > 64 |
| Pseudomonas fluorescens FW300-N2C3 | 0.23 | AO356_23050 | | C4-dicarboxylate ABC transporter | 0.31 | AO356_21435 | | pseudouridine synthase | low | > 104 |
| Pectobacterium carotovorum WPP14 | 0.22 | HER17_RS19680 | | TRAP transporter small permease | 0.31 | HER17_RS06990 | | tRNA pseudouridine(38-40) synthase TruA | low | > 75 |
| Pseudomonas simiae WCS417 | 0.22 | PS417_17375 | | C4-dicarboxylate ABC transporter | 0.30 | PS417_18565 | | pseudouridine synthase | — | — |
| Pseudomonas sp. RS175 | 0.22 | PFR28_02439 | | hypothetical protein | 0.31 | PFR28_02817 | | tRNA pseudouridine synthase A | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.21 | Pf6N2E2_486 | | TRAP-type C4-dicarboxylate transport system, small permease component | 0.31 | Pf6N2E2_70 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.21 | BPHYT_RS24180 | | C4-dicarboxylate ABC transporter substrate-binding protein | 0.32 | BPHYT_RS33885 | | tRNA pseudouridine synthase A | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.20 | Psyr_0899 | | Tripartite ATP-independent periplasmic transporter, DctQ component | 0.31 | Psyr_1662 | | tRNA pseudouridine synthase | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.20 | Psest_0362 | | TRAP-type C4-dicarboxylate transport system, small permease component | 0.30 | Psest_2585 | | pseudouridylate synthase I | low | > 67 |
| Pseudomonas syringae pv. syringae B728a | 0.20 | Psyr_0899 | | Tripartite ATP-independent periplasmic transporter, DctQ component | 0.31 | Psyr_1662 | | tRNA pseudouridine synthase | low | > 86 |
| Rahnella sp. WP5 | 0.20 | EX31_RS08015 | | TRAP transporter small permease | 0.30 | EX31_RS19600 | | tRNA pseudouridine(38-40) synthase TruA | low | > 89 |
| Acidovorax sp. GW101-3H11 | 0.20 | Ac3H11_3956 | | TRAP-type C4-dicarboxylate transport system, small permease component | 0.30 | Ac3H11_1532 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 79 |
| Pantoea sp. MT58 | 0.16 | IAI47_03225 | | TRAP transporter small permease | 0.28 | IAI47_06245 | | tRNA pseudouridine(38-40) synthase TruA | low | > 76 |
Not shown: 0 genomes with orthologs for Atu3136 only; 77 genomes with orthologs for Atu0368 only