| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2C3 | 1.0 | AO356_14785 | | ABC-ATPase UvrA | 1.0 | AO356_05925 | | LysR family transcriptional regulator | 0.48 | 18 |
| Pseudomonas fluorescens FW300-N2E2 | 1.00 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | 0.98 | Pf6N2E2_3045 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | low | > 103 |
| Pseudomonas sp. RS175 | 0.99 | PFR28_03974 | | UvrABC system protein A | 0.98 | PFR28_00419 | | HTH-type transcriptional regulator DmlR | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.98 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | 0.97 | Pf1N1B4_3107 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.97 | PfGW456L13_1283 | | Excinuclease ABC subunit A | 0.97 | PfGW456L13_4683 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.97 | AO353_06855 | | ABC-ATPase UvrA | 0.96 | AO353_16575 | | LysR family transcriptional regulator | 0.28 | 99 |
| Pseudomonas simiae WCS417 | 0.97 | PS417_25395 | | excinuclease ABC subunit A | 0.95 | PS417_06325 | | LysR family transcriptional regulator | 0.21 | 72 |
| Pseudomonas fluorescens SBW25 | 0.97 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.95 | PFLU_RS06390 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.97 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | 0.95 | PFLU_RS06390 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.95 | Psyr_4520 | | Excinuclease ABC subunit A | 0.89 | Psyr_1366 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.95 | Psyr_4520 | | Excinuclease ABC subunit A | 0.89 | Psyr_1366 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas putida KT2440 | 0.93 | PP_0483 | | excinuclease (uvrABC system protein A) | 0.89 | PP_1615 | | Transcriptional regulator, LysR family | — | — |
| Pseudomonas sp. S08-1 | 0.92 | OH686_15495 | | excinuclease ABC subunit A | 0.81 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.90 | Psest_3576 | | excinuclease ABC, A subunit | 0.71 | Psest_2817 | | Transcriptional regulator | low | > 67 |
| Escherichia coli Nissle 1917 | 0.77 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | 0.29 | ECOLIN_RS17670 | | L-tartrate utilization transcriptional activator TtdR | low | > 55 |
| Escherichia coli ECRC98 | 0.77 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | 0.29 | JDDGAC_22325 | ttdR | DNA-binding transcriptional activator TtdR | low | > 86 |
| Escherichia coli ECRC99 | 0.77 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | 0.29 | KEDOAH_09455 | ttdR | DNA-binding transcriptional activator TtdR | — | — |
| Escherichia coli ECOR38 | 0.77 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | 0.29 | HEPCGN_17545 | ttdR | DNA-binding transcriptional activator TtdR | low | > 87 |
| Escherichia coli ECRC101 | 0.77 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | 0.29 | MCAODC_09205 | ttdR | DNA-binding transcriptional activator TtdR | low | > 87 |
| Escherichia fergusonii Becca | 0.77 | EFB2_04533 | | UvrABC system protein A | 0.29 | EFB2_00751 | | HTH-type transcriptional regulator DmlR | low | > 86 |
| Escherichia coli ECRC102 | 0.77 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | 0.29 | NIAGMN_16455 | ttdR | DNA-binding transcriptional activator TtdR | — | — |
| Escherichia coli ECRC62 | 0.77 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | 0.29 | BNILDI_01035 | ttdR | DNA-binding transcriptional activator TtdR | low | > 75 |
| Escherichia coli BW25113 | 0.77 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | 0.29 | b3060 | ygiP | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.77 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | 0.29 | NOLOHH_10480 | ttdR | DNA-binding transcriptional activator TtdR | low | > 75 |
| Escherichia coli ECRC100 | 0.77 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | 0.29 | OKFHMN_18690 | ttdR | DNA-binding transcriptional activator TtdR | low | > 80 |
| Escherichia coli BL21 | 0.77 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | 0.29 | ECD_02930 | | transcriptional activator of ttdABT | low | > 61 |
| Dickeya dianthicola 67-19 | 0.77 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | 0.30 | HGI48_RS12725 | | LysR family transcriptional regulator | low | > 71 |
| Dickeya dianthicola ME23 | 0.77 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | 0.33 | DZA65_RS14535 | | LysR family transcriptional regulator | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.76 | MIT1002_00179 | | Excinuclease ABC subunit A | 0.41 | MIT1002_03088 | | D-malate degradation protein R | low | > 70 |
| Enterobacter asburiae PDN3 | 0.76 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | 0.32 | EX28DRAFT_1614 | | Transcriptional regulator | low | > 76 |
| Shewanella amazonensis SB2B | 0.75 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | 0.51 | Sama_0005 | | LysR, substrate-binding (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.75 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | 0.56 | SO2053 | | transcriptional regulator, LysR family (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.75 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | 0.57 | Shewana3_1836 | | LysR family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.74 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | 0.57 | Shew_1539 | | LysR family transcriptional regulator (RefSeq) | low | > 60 |
| Azospirillum sp. SherDot2 | 0.61 | MPMX19_01152 | | UvrABC system protein A | 0.58 | MPMX19_05327 | | HTH-type transcriptional regulator PgrR | low | > 112 |
| Azospirillum brasilense Sp245 | 0.60 | AZOBR_RS15370 | | excinuclease ABC subunit A | 0.68 | AZOBR_RS16520 | | LysR family transcriptional regulator | low | > 97 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_02673 | | excinuclease ABC subunit A | 0.55 | CCNA_02602 | | LysR-family transcriptional regulator | low | > 67 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_02673 | | excinuclease ABC subunit A | 0.55 | CCNA_02602 | | LysR-family transcriptional regulator | low | > 66 |
| Agrobacterium fabrum C58 | 0.59 | Atu1513 | | ABC excinuclease subunit A | 0.31 | Atu5187 | | LysR family transcriptional regulator | low | > 89 |
Not shown: 64 genomes with orthologs for AO356_14785 only; 0 genomes with orthologs for AO356_05925 only