Conservation of cofitness between AMB_RS13210 and AMB_RS03620 in Magnetospirillum magneticum AMB-1

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Magnetospirillum magneticum AMB-1 1.0 AMB_RS13210 polyamine ABC transporter substrate-binding protein 1.0 AMB_RS03620 iron-dependent peroxidase 0.54 18
Serratia liquefaciens MT49 0.47 IAI46_08370 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.37 IAI46_18515 Dyp-type peroxidase low > 86
Dickeya dadantii 3937 0.47 DDA3937_RS09460 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.36 DDA3937_RS04420 Dyp-type peroxidase low > 74
Klebsiella michiganensis M5al 0.46 BWI76_RS09460 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.34 BWI76_RS20710 dyp-type peroxidase family protein low > 92
Enterobacter sp. TBS_079 0.46 MPMX20_01495 Putrescine-binding periplasmic protein 0.35 MPMX20_03318 Dye-decolorizing peroxidase YfeX low > 85
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_08580 spermidine/putrescine ABC transporter substrate-binding protein 0.35 AO353_25350 peroxidase low > 101
Enterobacter asburiae PDN3 0.46 EX28DRAFT_2099 Spermidine/putrescine-binding periplasmic protein 0.36 EX28DRAFT_0204 Dyp-type peroxidase family low > 76
Dickeya dianthicola ME23 0.46 DZA65_RS09790 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.36 DZA65_RS04310 Dyp-type peroxidase low > 75
Shewanella amazonensis SB2B 0.46 Sama_2642 polyamine ABC transporter, periplasmic polyamine-binding protein (RefSeq) 0.39 Sama_0670 melanin biosynthesis protein TyrA, putative (RefSeq) low > 62
Dickeya dianthicola 67-19 0.46 HGI48_RS09480 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.36 HGI48_RS04395 Dyp-type peroxidase low > 71
Escherichia coli BW25113 0.45 b0854 potF putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) 0.34 b2431 b2431 orf, hypothetical protein (VIMSS) low > 76
Shewanella sp. ANA-3 0.45 Shewana3_3097 extracellular solute-binding protein (RefSeq) 0.39 Shewana3_3513 Dyp-type peroxidase family protein (RefSeq) low > 73
Escherichia coli BL21 0.45 ECD_00859 putrescine ABC transporter periplasmic binding protein 0.33 ECD_02331 porphyrinogen oxidase, cytoplasmic low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_02814 Putrescine-binding periplasmic protein 0.33 OHPLBJKB_01291 putative deferrochelatase/peroxidase YfeX low > 73
Pectobacterium carotovorum WPP14 0.45 HER17_RS12500 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.37 HER17_RS17230 Dyp-type peroxidase low > 75
Escherichia coli ECRC62 0.45 BNILDI_20585 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.33 BNILDI_12665 yfeX porphyrinogen peroxidase low > 75
Escherichia coli ECOR27 0.45 NOLOHH_22330 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.33 NOLOHH_13800 yfeX porphyrinogen peroxidase low > 75
Escherichia fergusonii Becca 0.45 EFB2_03207 Putrescine-binding periplasmic protein 0.33 EFB2_01448 Dye-decolorizing peroxidase YfeX low > 86
Pseudomonas simiae WCS417 0.45 PS417_27125 spermidine/putrescine ABC transporter substrate-binding protein 0.35 PS417_11115 peroxidase low > 88
Escherichia coli ECRC101 0.45 MCAODC_25175 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.33 MCAODC_12650 yfeX porphyrinogen peroxidase low > 87
Escherichia coli ECOR38 0.45 HEPCGN_02070 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.33 HEPCGN_21295 yfeX porphyrinogen peroxidase low > 87
Rahnella sp. WP5 0.45 EX31_RS09630 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.38 EX31_RS20230 Dyp-type peroxidase low > 89
Escherichia coli ECRC102 0.45 NIAGMN_04005 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.33 NIAGMN_19890 yfeX porphyrinogen peroxidase — —
Escherichia coli ECRC98 0.45 JDDGAC_09595 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.33 JDDGAC_26070 yfeX porphyrinogen peroxidase low > 86
Escherichia coli ECRC100 0.45 OKFHMN_05960 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.33 OKFHMN_22120 yfeX porphyrinogen peroxidase low > 80
Escherichia coli ECRC99 0.45 KEDOAH_21950 potF spermidine/putrescine ABC transporter substrate-binding protein PotF 0.33 KEDOAH_06100 yfeX porphyrinogen peroxidase — —
Escherichia coli Nissle 1917 0.45 ECOLIN_RS04550 spermidine/putrescine ABC transporter substrate-binding protein PotF 0.34 ECOLIN_RS13940 porphyrinogen peroxidase low > 55
Pseudomonas fluorescens SBW25 0.44 PFLU_RS28775 polyamine ABC transporter substrate-binding protein 0.19 PFLU_RS18740 Dyp-type peroxidase low > 109
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS28775 polyamine ABC transporter substrate-binding protein 0.19 PFLU_RS18740 Dyp-type peroxidase low > 109
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF758 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) 0.35 GFF2061 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup low > 78
Shewanella oneidensis MR-1 0.43 SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) 0.39 SO0740 melanin biosynthesis protein TyrA, putative (NCBI ptt file) low > 76
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS26645 ABC transporter substrate-binding protein 0.36 BPHYT_RS30665 peroxidase low > 109
Shewanella loihica PV-4 0.42 Shew_0973 extracellular solute-binding protein (RefSeq) 0.38 Shew_0864 Dyp-type peroxidase family protein (RefSeq) — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_05180 putrescine transport system substrate-binding protein 0.34 H281DRAFT_06452 putative iron-dependent peroxidase low > 103
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS12945 polyamine ABC transporter substrate-binding protein 0.35 QEN71_RS09545 Dyp-type peroxidase low > 153
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_07140 spermidine/putrescine ABC transporter substrate-binding protein 0.40 CSW01_10710 deferrochelatase low > 62
Bacteroides thetaiotaomicron VPI-5482 0.12 BT1288 spermidine/putrescine ABC transporter (NCBI ptt file) 0.27 BT1219 conserved hypothetical protein (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.11 BACOVA_00085 ABC transporter, solute-binding protein 0.27 BACOVA_00506 Dyp-type peroxidase family protein low > 94

Not shown: 31 genomes with orthologs for AMB_RS13210 only; 7 genomes with orthologs for AMB_RS03620 only