Conservation of cofitness between Shewana3_0099 and Shewana3_3455 in Shewanella sp. ANA-3

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella sp. ANA-3 1.0 Shewana3_0099 histidine utilization repressor (RefSeq) 1.0 Shewana3_3455 ABC transporter related (RefSeq) 0.51 8
Shewanella oneidensis MR-1 0.98 SO0096 hutC histidine utilization repressor (NCBI ptt file) 0.95 SO0821 ABC transporter, ATP-binding/permease protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.49 MIT1002_00903 putative HTH-type transcriptional regulator YurK 0.41 MIT1002_00482 Macrolide export ATP-binding/permease protein MacB low > 70
Pseudomonas putida KT2440 0.48 PP_5035 Histidine utilization repressor 0.39 PP_4210 pyoverdine efflux carrier and ATP binding protein low > 96
Azospirillum sp. SherDot2 0.47 MPMX19_04937 Mannosyl-D-glycerate transport/metabolism system repressor MngR 0.37 MPMX19_03090 Macrolide export ATP-binding/permease protein MacB low > 112
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_0366 transcriptional regulator, GntR family 0.56 Psyr_2618 ABC transporter:Protein of unknown function DUF214 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_0366 transcriptional regulator, GntR family 0.56 Psyr_2618 ABC transporter:Protein of unknown function DUF214 low > 86
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_329 Histidine utilization repressor 0.37 PfGW456L13_2392 Pyoverdine efflux carrier and ATP binding protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_1590 Histidine utilization repressor 0.39 Pf1N1B4_135 Pyoverdine efflux carrier and ATP binding protein low > 87
Dickeya dadantii 3937 0.46 DDA3937_RS15020 histidine utilization repressor 0.57 DDA3937_RS04445 MacB family efflux pump subunit low > 74
Dickeya dianthicola ME23 0.46 DZA65_RS15850 histidine utilization repressor 0.57 DZA65_RS04320 MacB family efflux pump subunit low > 75
Pseudomonas sp. RS175 0.46 PFR28_04963 HTH-type transcriptional repressor NagR 0.56 PFR28_02257 Macrolide export ATP-binding/permease protein MacB — —
Pseudomonas fluorescens SBW25 0.46 PFLU_RS01765 histidine utilization repressor 0.55 PFLU_RS12500 MacB family efflux pump subunit low > 109
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_3807 Histidine utilization repressor 0.39 Pf6N2E2_19 Pyoverdine efflux carrier and ATP binding protein low > 103
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS01765 histidine utilization repressor 0.55 PFLU_RS12500 MacB family efflux pump subunit low > 109
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_09640 histidine utilization repressor 0.55 AO356_28200 macrolide transporter low > 104
Pseudomonas simiae WCS417 0.46 PS417_01710 histidine utilization repressor 0.41 PS417_17640 macrolide ABC transporter ATP-binding protein low > 88
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2221 histidine utilization repressor, proteobacterial 0.54 EX28DRAFT_2053 ABC-type antimicrobial peptide transport system, ATPase component low > 76
Sinorhizobium meliloti 1021 0.45 SMc00674 histidine utilization repressor transcription regulator protein 0.41 SMc04351 transmembrane ATP-binding ABC transporter protein low > 103
Klebsiella michiganensis M5al 0.45 BWI76_RS08730 histidine utilization repressor 0.51 BWI76_RS09600 macrolide ABC transporter permease/ATP-binding protein MacB low > 92
Enterobacter sp. TBS_079 0.45 MPMX20_01398 HTH-type transcriptional repressor NagR 0.53 MPMX20_01541 Macrolide export ATP-binding/permease protein MacB low > 85
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS07755 histidine utilization repressor 0.56 QEN71_RS35165 MacB family efflux pump subunit low > 153
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS16925 histidine utilization repressor 0.54 RR42_RS26390 MacB family efflux pump subunit low > 128
Variovorax sp. SCN45 0.43 GFF6410 Histidine utilization repressor 0.57 GFF1293 Macrolide export ATP-binding/permease protein MacB low > 127
Serratia liquefaciens MT49 0.43 IAI46_10615 histidine utilization repressor 0.62 IAI46_18485 MacB family efflux pump subunit low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF3591 Histidine utilization repressor 0.41 GFF3902 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) low > 90
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF665 Histidine utilization repressor 0.53 GFF4904 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) low > 78
Rhodospirillum rubrum S1H 0.40 Rru_A1294 Transcriptional Regulator, Histidine utilization repressor, GntR family (NCBI) 0.38 Rru_A3236 hypothetical protein (NCBI) low > 58
Azospirillum brasilense Sp245 0.15 AZOBR_RS31515 GntR family transcriptional regulator 0.35 AZOBR_RS27340 macrolide ABC transporter ATP-binding protein low > 97
Escherichia coli BW25113 0.15 b3375 yhfR putative transcriptional regulator (VIMSS) 0.53 b0879 macB fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component (NCBI) low > 76
Escherichia coli BL21 0.15 ECD_03225 putative DNA-binding transcriptional regulator 0.53 ECD_00884 macrolide ABC transporter peremase/ATPase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.15 OHPLBJKB_00328 putative fructoselysine utilization operon transcriptional repressor 0.53 OHPLBJKB_02789 Macrolide export ATP-binding/permease protein MacB low > 73
Escherichia coli ECRC101 0.15 OKFHMN_17145 phoB transcriptional regulator PhoB 0.53 OKFHMN_05805 macB macrolide ABC transporter ATP-binding protein/permease MacB — —
Escherichia coli ECRC98 0.15 JDDGAC_20775 phoB transcriptional regulator PhoB 0.53 JDDGAC_09440 macB macrolide ABC transporter ATP-binding protein/permease MacB — —
Escherichia coli ECRC102 0.15 NIAGMN_14915 phoB transcriptional regulator PhoB 0.53 NIAGMN_03845 macB macrolide ABC transporter ATP-binding protein/permease MacB — —
Escherichia coli ECRC101 0.15 MCAODC_07675 phoB transcriptional regulator PhoB 0.53 MCAODC_25020 macB macrolide ABC transporter ATP-binding protein/permease MacB — —
Escherichia coli ECRC99 0.15 KEDOAH_10995 phoB transcriptional regulator PhoB 0.53 KEDOAH_22105 macB macrolide ABC transporter ATP-binding protein/permease MacB — —
Herbaspirillum seropedicae SmR1 0.15 HSERO_RS14920 GntR family transcriptional regulator 0.66 HSERO_RS10240 macrolide ABC transporter ATP-binding protein — —
Escherichia coli ECOR27 0.14 NOLOHH_07250 yidP Uncharacterized HTH-type transcriptional regulator YidP 0.53 NOLOHH_22200 macB macrolide ABC transporter ATP-binding protein/permease MacB low > 57
Escherichia coli ECOR38 0.14 HEPCGN_13815 yidP Uncharacterized HTH-type transcriptional regulator YidP 0.53 HEPCGN_22880 macB macrolide ABC transporter ATP-binding protein/permease MacB low > 85
Escherichia coli ECRC62 0.14 BNILDI_04280 yidP Uncharacterized HTH-type transcriptional regulator YidP 0.53 BNILDI_20455 macB macrolide ABC transporter ATP-binding protein/permease MacB — —
Pectobacterium carotovorum WPP14 0.11 HER17_RS13540 GntR family transcriptional regulator 0.63 HER17_RS17205 MacB family efflux pump subunit low > 75

Not shown: 33 genomes with orthologs for Shewana3_0099 only; 3 genomes with orthologs for Shewana3_3455 only