Conservation of cofitness between Sama_0887 and Sama_3264 in Shewanella amazonensis SB2B

22 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0887 hypothetical protein (RefSeq) 1.0 Sama_3264 putative diguanylate phosphodiesterase (RefSeq) 0.41 11
Shewanella sp. ANA-3 0.85 Shewana3_3019 cytochrome c assembly protein (RefSeq) 0.78 Shewana3_0376 diguanylate cyclase/phosphodiesterase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.84 SO1355 membrane protein, putative (NCBI ptt file) 0.77 SO4323 GGDEF domain protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.80 Shew_1061 cytochrome c assembly protein (RefSeq) 0.79 Shew_0307 diguanylate cyclase/phosphodiesterase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_02985 inner membrane protein YpjD 0.26 CSW01_19490 GGDEF domain-containing protein low > 62
Alteromonas macleodii MIT1002 0.35 MIT1002_01295 Inner membrane protein YpjD 0.14 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr low > 70
Pectobacterium carotovorum WPP14 0.34 HER17_RS05105 inner membrane protein YpjD 0.13 HER17_RS05880 EAL domain-containing protein low > 75
Pseudomonas putida KT2440 0.23 PP_1460 putative Membrane protein 0.13 PP_0165 GGDEF domain protein low > 96
Pseudomonas sp. DMC3 0.23 GFF1980 Inner membrane protein YpjD 0.14 GFF4286 hypothetical protein low > 89
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_04395 cytochrome C assembly protein 0.14 AO353_11170 hypothetical protein — —
Pseudomonas sp. BP01 0.22 JOY50_RS11665 inner membrane protein YpjD 0.13 JOY50_RS28180 lapD cyclic di-GMP receptor LapD — —
Pseudomonas sp. RS175 0.22 PFR28_00325 Inner membrane protein YpjD 0.14 PFR28_04783 hypothetical protein low > 88
Marinobacter adhaerens HP15 0.22 HP15_756 cytochrome c assembly protein 0.12 HP15_3218 diguanylate cyclase/phosphodiesterase low > 73
Pseudomonas sp. S08-1 0.22 OH686_17715 Inner membrane protein YpjD 0.14 OH686_20650 Membrane bound c-di-GMP receptor LapD low > 80
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_1714 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.15 PfGW456L13_4428 Membrane bound c-di-GMP receptor LapD low > 87
Pseudomonas sp. SVBP6 0.21 COO64_RS04870 inner membrane protein YpjD 0.13 COO64_RS26435 lapD cyclic di-GMP receptor LapD 0.44 17
Pseudomonas stutzeri RCH2 0.21 Psest_3135 ABC-type uncharacterized transport system, permease component 0.13 Psest_1864 diguanylate cyclase (GGDEF) domain — —
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_06415 cytochrome C assembly protein 0.13 AO356_10580 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.20 Pf6N2E2_3151 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.14 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD low > 103
Pseudomonas fluorescens FW300-N1B4 0.19 Pf1N1B4_875 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.14 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD low > 87
Pseudomonas aeruginosa PA14 0.19 IKLFDK_19130 inner membrane protein YpjD 0.12 IKLFDK_06810 Diguanylate cyclase/phosphodiesterase low > 101
Methylophilus sp. DMC18 0.16 GFF1749 Cytochrome c biogenesis protein CcsA 0.11 GFF459 hypothetical protein low > 43
Acidovorax sp. GW101-3H11 0.14 Ac3H11_4016 CcsA-related protein 0.15 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD low > 79

Not shown: 39 genomes with orthologs for Sama_0887 only; 0 genomes with orthologs for Sama_3264 only