Conservation of cofitness between BT1374 and BT3320 in Bacteroides thetaiotaomicron VPI-5482

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 1.0 BT3320 dihydrodipicolinate reductase (NCBI ptt file) 0.82 10
Bacteroides ovatus ATCC 8483 0.97 BACOVA_00215 diaminopimelate decarboxylase 0.91 BACOVA_00959 dihydrodipicolinate reductase 0.86 60
Bacteroides stercoris CC31F 0.88 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.85 HMPREF1181_RS02275 4-hydroxy-tetrahydrodipicolinate reductase low > 56
Phocaeicola vulgatus CL09T03C04 0.85 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.86 HMPREF1058_RS11730 4-hydroxy-tetrahydrodipicolinate reductase 0.71 20
Phocaeicola dorei CL03T12C01 0.84 ABI39_RS19950 diaminopimelate decarboxylase 0.86 ABI39_RS05175 4-hydroxy-tetrahydrodipicolinate reductase low > 72
Parabacteroides merdae CL09T00C40 0.67 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.60 HMPREF1078_RS05545 4-hydroxy-tetrahydrodipicolinate reductase low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.57 CA264_02390 diaminopimelate decarboxylase 0.36 CA264_04750 4-hydroxy-tetrahydrodipicolinate reductase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS10180 diaminopimelate decarboxylase 0.44 ABZR88_RS02050 4-hydroxy-tetrahydrodipicolinate reductase — —
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS09650 diaminopimelate decarboxylase 0.45 CA265_RS15670 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (from data) — —
Shewanella oneidensis MR-1 0.35 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.13 SO_1140 dapB dihydrodipicolinate reductase (RefSeq) — —
Shewanella sp. ANA-3 0.35 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.13 Shewana3_0966 dihydrodipicolinate reductase (RefSeq) — —
Dechlorosoma suillum PS 0.34 Dsui_1182 diaminopimelate decarboxylase 0.17 Dsui_3066 dihydrodipicolinate reductase — —
Rhizobium sp. OAE497 0.34 ABIE40_RS17530 diaminopimelate decarboxylase 0.14 ABIE40_RS13905 4-hydroxy-tetrahydrodipicolinate reductase low > 107
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02296 diaminopimelate decarboxylase 0.16 CCNA_03664 dihydrodipicolinate reductase — —
Caulobacter crescentus NA1000 0.33 CCNA_02296 diaminopimelate decarboxylase 0.16 CCNA_03664 dihydrodipicolinate reductase — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS22725 diaminopimelate decarboxylase 0.17 AMB_RS22745 4-hydroxy-tetrahydrodipicolinate reductase — —
Pseudomonas sp. S08-1 0.31 OH686_13800 diaminopimelate decarboxylase 0.18 OH686_17070 4-hydroxy-tetrahydrodipicolinate reductase — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS12685 diaminopimelate decarboxylase 0.16 ABCV34_RS07485 4-hydroxy-tetrahydrodipicolinate reductase — —
Methanococcus maripaludis JJ 0.30 MMJJ_RS08170 diaminopimelate decarboxylase 0.18 MMJJ_RS00345 4-hydroxy-tetrahydrodipicolinate reductase low > 28
Methanococcus maripaludis S2 0.30 MMP_RS06180 diaminopimelate decarboxylase 0.18 MMP_RS04790 4-hydroxy-tetrahydrodipicolinate reductase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS12545 diaminopimelate decarboxylase 0.15 A4249_RS13645 4-hydroxy-tetrahydrodipicolinate reductase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.37 Echvi_2395 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (from data) — —
Kangiella aquimarina DSM 16071 0.21 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated 0.12 B158DRAFT_0614 dihydrodipicolinate reductase (EC 1.3.1.26) — —
Enterobacter sp. TBS_079 0.19 MPMX20_03705 Diaminopimelate decarboxylase 0.15 MPMX20_00738 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli Nissle 1917 0.19 ECOLIN_RS15930 diaminopimelate decarboxylase 0.16 ECOLIN_RS00160 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia fergusonii Becca 0.19 EFB2_01045 Diaminopimelate decarboxylase 0.16 EFB2_04014 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli ECOR38 0.19 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.16 HEPCGN_08940 dapB 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli ECRC62 0.19 BNILDI_10310 lysA diaminopimelate decarboxylase 0.16 BNILDI_08315 dapB 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli ECRC98 0.19 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.16 JDDGAC_14550 dapB 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli ECRC99 0.19 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.16 KEDOAH_17200 dapB 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_00891 Diaminopimelate decarboxylase 0.15 OHPLBJKB_03626 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli BW25113 0.19 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.16 b0031 dapB dihydrodipicolinate reductase (NCBI) — —
Escherichia coli BL21 0.19 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.15 ECD_00035 dihydrodipicolinate reductase — —
Escherichia coli ECRC101 0.19 MCAODC_10470 lysA diaminopimelate decarboxylase 0.16 MCAODC_01470 dapB 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli ECRC102 0.19 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.16 NIAGMN_08805 dapB 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli ECRC101 0.19 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.16 OKFHMN_10955 dapB 4-hydroxy-tetrahydrodipicolinate reductase — —
Dickeya dianthicola ME23 0.19 DZA65_RS00505 type III PLP-dependent enzyme 0.16 DZA65_RS19390 4-hydroxy-tetrahydrodipicolinate reductase — —
Escherichia coli ECOR27 0.19 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.15 NOLOHH_03285 dapB 4-hydroxy-tetrahydrodipicolinate reductase — —
Dickeya dianthicola 67-19 0.19 HGI48_RS00505 type III PLP-dependent enzyme 0.16 HGI48_RS18250 4-hydroxy-tetrahydrodipicolinate reductase — —
Dickeya dadantii 3937 0.19 DDA3937_RS20740 type III PLP-dependent enzyme 0.16 DDA3937_RS18315 4-hydroxy-tetrahydrodipicolinate reductase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.16 GFF216 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) — —
Mycobacterium tuberculosis H37Rv 0.17 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.16 Rv2773c Dihydrodipicolinate reductase DapB (DHPR) — —

Not shown: 58 genomes with orthologs for BT1374 only; 1 genomes with orthologs for BT3320 only