Conservation of cofitness between SO4243 and SO0035 in Shewanella oneidensis MR-1

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO4243 rarD rarD protein (NCBI ptt file) 1.0 SO0035 smg smg protein (NCBI ptt file) 0.29 6
Shewanella sp. ANA-3 0.99 Shewana3_3765 transporter DMT superfamily protein (RefSeq) 0.99 Shewana3_0038 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.81 Shew_3476 transporter DMT superfamily protein (RefSeq) 0.90 Shew_3733 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.79 Sama_0332 rarD protein (RefSeq) 0.74 Sama_0046 hypothetical protein (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_01040 protein RarD 0.55 CSW01_00250 hypothetical protein low > 62
Escherichia coli BL21 0.60 ECD_03698 putative chloramphenical resistance permease 0.58 ECD_03135 DUF494 family putative periplasmic protein low > 61
Escherichia fergusonii Becca 0.60 EFB2_04818 Protein RarD 0.59 EFB2_00539 Protein Smg low > 86
Escherichia coli ECOR38 0.60 HEPCGN_13075 rarD EamA family transporter RarD 0.59 HEPCGN_16370 smg DUF494 domain-containing protein low > 87
Escherichia coli BW25113 0.60 b3819 rarD predicted chloramphenical resistance permease (NCBI) 0.58 b3284 smg hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_04232 Protein RarD 0.58 OHPLBJKB_00419 Protein Smg low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF245 Protein rarD 0.58 GFF2394 Protein of unknown function Smg low > 78
Escherichia coli ECRC98 0.60 JDDGAC_18000 rarD EamA family transporter RarD 0.59 JDDGAC_21170 smg DUF494 domain-containing protein low > 86
Escherichia coli ECRC99 0.60 KEDOAH_13775 rarD EamA family transporter RarD 0.59 KEDOAH_10600 smg DUF494 domain-containing protein — —
Escherichia coli Nissle 1917 0.60 ECOLIN_RS21920 EamA family transporter RarD 0.59 ECOLIN_RS18855 DUF494 family protein Smg low > 55
Escherichia coli ECRC102 0.60 NIAGMN_12130 rarD EamA family transporter RarD 0.59 NIAGMN_15310 smg DUF494 domain-containing protein — —
Escherichia coli ECRC62 0.60 BNILDI_05025 rarD EamA family transporter RarD 0.59 BNILDI_02180 smg DUF494 domain-containing protein low > 75
Escherichia coli ECRC100 0.60 OKFHMN_14375 rarD EamA family transporter RarD 0.59 OKFHMN_17550 smg DUF494 domain-containing protein low > 80
Escherichia coli ECOR27 0.60 NOLOHH_06505 rarD EamA family transporter RarD 0.59 NOLOHH_09340 smg DUF494 domain-containing protein low > 75
Enterobacter asburiae PDN3 0.59 EX28DRAFT_4484 rarD protein 0.60 EX28DRAFT_0043 Uncharacterized protein conserved in bacteria low > 76
Escherichia coli ECRC101 0.59 MCAODC_04880 rarD EamA family transporter RarD 0.59 MCAODC_08070 smg DUF494 domain-containing protein low > 87
Klebsiella michiganensis M5al 0.59 BWI76_RS01230 chloramphenicol resistance permease RarD 0.59 BWI76_RS25660 hypothetical protein low > 92
Enterobacter sp. TBS_079 0.58 MPMX20_04461 Protein RarD 0.60 MPMX20_04192 Protein Smg low > 85
Serratia liquefaciens MT49 0.58 IAI46_00755 EamA family transporter RarD 0.62 IAI46_23255 DUF494 domain-containing protein low > 86
Erwinia tracheiphila SCR3 0.58 LU632_RS24110 rarD EamA family transporter RarD 0.58 LU632_RS22460 smg DUF494 family protein Smg low > 74
Pectobacterium carotovorum WPP14 0.58 HER17_RS01380 EamA family transporter RarD 0.62 HER17_RS02235 DUF494 family protein low > 75
Rahnella sp. WP5 0.57 EX31_RS15195 EamA family transporter RarD 0.63 EX31_RS15965 DUF494 domain-containing protein low > 89
Pantoea sp. MT58 0.56 IAI47_18375 EamA family transporter RarD 0.60 IAI47_02300 DUF494 domain-containing protein low > 76
Dickeya dadantii 3937 0.54 DDA3937_RS19865 EamA family transporter RarD 0.61 DDA3937_RS19115 DUF494 domain-containing protein low > 74
Dickeya dianthicola ME23 0.52 DZA65_RS21060 EamA family transporter RarD 0.63 DZA65_RS20330 DUF494 domain-containing protein low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS20020 EamA family transporter RarD 0.63 HGI48_RS19205 DUF494 domain-containing protein low > 71
Alteromonas macleodii MIT1002 0.50 MIT1002_00151 putative chloramphenical resistance permease RarD 0.67 MIT1002_00023 hypothetical protein low > 70
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0490 rarD protein 0.26 B158DRAFT_0401 Uncharacterized protein conserved in bacteria low > 40
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.4969.1 RarD protein, chloamphenicol sensitive 0.41 Xcc-8004.4747.1 Protein of unknown function Smg low > 74
Lysobacter sp. OAE881 0.37 ABIE51_RS03205 EamA family transporter RarD 0.43 ABIE51_RS02230 DUF494 family protein low > 62
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS23555 membrane protein 0.25 HSERO_RS23395 hypothetical protein low > 78
Castellaniella sp019104865 MT123 0.19 ABCV34_RS08310 EamA family transporter RarD 0.22 ABCV34_RS12300 DUF494 domain-containing protein 0.80 20

Not shown: 48 genomes with orthologs for SO4243 only; 5 genomes with orthologs for SO0035 only