Homologs of CA265_RS12200 from Pedobacter sp. GW460-11-11-14-LB5

hypothetical protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12200 hypothetical protein insig. 100 100
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15130 RNA polymerase sigma factor insig. 44 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12535 RNA polymerase insig. 35 74
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_09115 hypothetical protein strong 30 78
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24675 RNA polymerase insig. 30 75
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_03970 hypothetical protein insig. 29 78
  Bacteroides ovatus ATCC 8483 BACOVA_02117 RNA polymerase sigma-70 factor insig. 32 76
  Bacteroides ovatus ATCC 8483 BACOVA_03337 RNA polymerase sigma factor, sigma-70 family insig. 25 86
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11095 hypothetical protein insig. 25 83
  Phocaeicola dorei CL03T12C01 ABI39_RS05700 RNA polymerase sigma-70 factor insig. 26 87
  Bacteroides thetaiotaomicron VPI-5482 BT0752 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 26 86
  Bacteroides ovatus ATCC 8483 BACOVA_02488 RNA polymerase sigma-70 factor insig. 26 83
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1322 RNA polymerase sigma factor, sigma-70 family sig. 31 68
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2161 RNA polymerase sigma factor, sigma-70 family insig. 28 81
  Bacteroides thetaiotaomicron VPI-5482 BT3517 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 23 89
  Bacteroides thetaiotaomicron VPI-5482 BT4636 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 24 81
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS03570 RNA polymerase sigma-70 factor insig. 26 86
  Bacteroides ovatus ATCC 8483 BACOVA_00436 sigma-70, region 4 insig. 23 79
  Dinoroseobacter shibae DFL-12 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 24 75
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12145 RNA polymerase sigma-70 factor insig. 24 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS12340 RNA polymerase sigma-70 factor cofit 28 73
  Phocaeicola dorei CL03T12C01 ABI39_RS10155 RNA polymerase sigma-70 factor insig. 26 78
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00590 RNA polymerase sigma-70 factor insig. 29 74
  Phocaeicola dorei CL03T12C01 ABI39_RS04680 RNA polymerase sigma factor insig. 22 74
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18610 RNA polymerase sigma-70 factor insig. 30 75
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS14720 RNA polymerase sigma factor insig. 27 85
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00795 sigma-70 family RNA polymerase sigma factor strong 27 76
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2139 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 22 77
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS05370 RNA polymerase subunit sigma-70 insig. 27 77
  Bacteroides thetaiotaomicron VPI-5482 BT1728 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 24 88
  Bacteroides ovatus ATCC 8483 BACOVA_04457 RNA polymerase sigma factor, sigma-70 family insig. 24 88
  Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 23 78
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11885 sigma-70 family RNA polymerase sigma factor insig. 26 90
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 23 78
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 23 78
  Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 23 78
  Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 23 78
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 23 78
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 23 78
  Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 23 78
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 23 78
  Bacteroides ovatus ATCC 8483 BACOVA_04866 RNA polymerase sigma-70 factor insig. 24 74
  Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 23 78
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12120 RNA polymerase sigma factor sig. 22 74
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02650 RNA polymerase sigma factor insig. 22 61
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13700 hypothetical protein insig. 29 77
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 21 76
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0837 RNA polymerase sigma factor, sigma-70 family insig. 27 79
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 21 76
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07135 RNA polymerase sigma factor insig. 23 76
  Herbaspirillum seropedicae SmR1 HSERO_RS12085 RNA polymerase sigma-E factor protein insig. 23 77
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11845 hypothetical protein insig. 27 88
  Bacteroides ovatus ATCC 8483 BACOVA_01604 Sigma-70 region 2 insig. 26 83
  Phocaeicola dorei CL03T12C01 ABI39_RS21180 sigma-70 family RNA polymerase sigma factor insig. 25 79
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3981 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 24 77
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS17775 hypothetical protein sig. 25 79
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14710 hypothetical protein insig. 23 83
  Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 22 78
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 22 78
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0726 RNA polymerase sigma factor, sigma-70 family insig. 23 69
  Bacteroides ovatus ATCC 8483 BACOVA_01132 sigma-70, region 4 insig. 26 80
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05665 RNA polymerase sigma-70 factor insig. 25 77
  Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 22 78
  Bacteroides ovatus ATCC 8483 BACOVA_00098 RNA polymerase sigma-70 factor insig. 24 79
  Bacteroides thetaiotaomicron VPI-5482 BT0188 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 25 70
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS07030 RNA polymerase sigma-70 factor insig. 29 74
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00850 hypothetical protein insig. 26 79
  Phocaeicola dorei CL03T12C01 ABI39_RS06270 RNA polymerase sigma-70 factor insig. 32 69
  Bacteroides stercoris CC31F HMPREF1181_RS01060 RNA polymerase sigma-70 factor insig. 23 78
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10800 RNA polymerase sigma-70 factor insig. 32 69
  Bacteroides stercoris CC31F HMPREF1181_RS00820 RNA polymerase sigma-70 factor insig. 28 68
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_09910 hypothetical protein insig. 26 75
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04750 RNA polymerase sigma-70 factor insig. 26 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1974 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 25 77
  Bacteroides ovatus ATCC 8483 BACOVA_01977 RNA polymerase sigma-70 factor insig. 32 83
  Bacteroides ovatus ATCC 8483 BACOVA_02944 RNA polymerase sigma-70 factor insig. 27 79
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS06675 hypothetical protein insig. 27 75
  Bacteroides ovatus ATCC 8483 BACOVA_00842 RNA polymerase sigma-70 factor insig. 26 77
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00160 hypothetical protein insig. 24 89
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07365 RNA polymerase sigma factor insig. 29 81
  Bacteroides ovatus ATCC 8483 BACOVA_00284 RNA polymerase sigma-70 factor insig. 24 80
  Bacteroides thetaiotaomicron VPI-5482 BT1617 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 23 77
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04910 RNA polymerase sigma-70 factor insig. 29 67
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 27 62
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15190 RNA polymerase sigma-70 factor cofit 26 73
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05690 RNA polymerase sigma-70 factor insig. 25 77
  Pseudomonas sp. S08-1 OH686_11525 hypothetical protein cofit 25 75
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13615 RNA polymerase sigma factor insig. 21 75
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2176 RNA polymerase sigma factor, sigma-70 family insig. 27 79
  Bacteroides ovatus ATCC 8483 BACOVA_00619 RNA polymerase sigma factor, sigma-70 family insig. 25 74
  Bacteroides thetaiotaomicron VPI-5482 BT4070 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 24 75
  Bacteroides ovatus ATCC 8483 BACOVA_00784 Sigma-70 region 2 insig. 21 74
  Bacteroides stercoris CC31F HMPREF1181_RS02545 sigma-70 family RNA polymerase sigma factor insig. 22 74
  Bacteroides thetaiotaomicron VPI-5482 BT2198 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 24 73
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS09605 RNA polymerase sigma-70 factor insig. 23 78
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18335 sigma-70 family RNA polymerase sigma factor strong 20 77
  Bacteroides thetaiotaomicron VPI-5482 BT1877 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 28 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2751 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 27 85
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05575 RNA polymerase sigma-70 factor insig. 27 77
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2655 RNA polymerase sigma factor, sigma-70 family insig. 26 79